| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,151,073 – 23,151,193 |
| Length | 120 |
| Max. P | 0.992098 |
| Location | 23,151,073 – 23,151,193 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.11 |
| Mean single sequence MFE | -31.70 |
| Consensus MFE | -25.42 |
| Energy contribution | -27.68 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.06 |
| Structure conservation index | 0.80 |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.992098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23151073 120 + 27905053 AGCAAGAAAUGCCGAAAAAAUAGCCAGCUAGCCAGAAAGGAAAAGCAAACGAAGCCAAACCGACAACUCCUGCCCGGCUGUUAGCGGCAUUGUGUGCAGUCUAACGACAACAUUCAAUAA .(((...(((((((....(((((((.(((..((.....))...)))...((.........)).............)))))))..)))))))...))).(((....)))............ ( -34.40) >DroSec_CAF1 1937 93 + 1 AGCAAGAAGUGCCGAAAAAAUAGCCAGCUAGCCAGAAAGGAAAAG---------------------------CCCGGCUGUUAGCGGCAUUGUGUGCAGUCUAACGACAACAUUCAAUAA .(((...(((((((....(((((((.(((..((.....))...))---------------------------)..)))))))..)))))))...))).(((....)))............ ( -34.30) >DroSim_CAF1 6367 120 + 1 AGCAAGAAGUGCCGAAAAAAUAGCCAGCUAGCCAGAAAGGAAAAGCAAACGAAGCCAAACCGACAACUCCUGCCCGGCUGUUAGCGGCAUUGUGUGCAGUCUAACGACAACAUUCAAUAA .(((...(((((((....(((((((.(((..((.....))...)))...((.........)).............)))))))..)))))))...))).(((....)))............ ( -34.40) >DroYak_CAF1 6382 120 + 1 AGUAUGAAAUGCUGAAAAAAUCGCCAGCUAGCCAGAAAGGAAAAGCAAACGAAGCCAAACCGACAACUCCUGCCCGACUGUUAGCGGCAUUGUGUGCAGUCUAACGACAACAUUCAAUAA (((((...))))).........(((.((((((.((...((....(((.......................)))))..)))))))))))((((.(((..(((....)))..))).)))).. ( -23.70) >consensus AGCAAGAAAUGCCGAAAAAAUAGCCAGCUAGCCAGAAAGGAAAAGCAAACGAAGCCAAACCGACAACUCCUGCCCGGCUGUUAGCGGCAUUGUGUGCAGUCUAACGACAACAUUCAAUAA .(((...(((((((....(((((((.(((..((.....))...)))...((.........)).............)))))))..)))))))...))).(((....)))............ (-25.42 = -27.68 + 2.25)
| Location | 23,151,073 – 23,151,193 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.11 |
| Mean single sequence MFE | -33.28 |
| Consensus MFE | -27.17 |
| Energy contribution | -28.80 |
| Covariance contribution | 1.63 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.863799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23151073 120 - 27905053 UUAUUGAAUGUUGUCGUUAGACUGCACACAAUGCCGCUAACAGCCGGGCAGGAGUUGUCGGUUUGGCUUCGUUUGCUUUUCCUUUCUGGCUAGCUGGCUAUUUUUUCGGCAUUUCUUGCU ..((((..(((.(((....))).)))..))))((((((...(((((((.(((((..(((((.......)))...))..))))).)))))))))).))).........((((.....)))) ( -36.30) >DroSec_CAF1 1937 93 - 1 UUAUUGAAUGUUGUCGUUAGACUGCACACAAUGCCGCUAACAGCCGGG---------------------------CUUUUCCUUUCUGGCUAGCUGGCUAUUUUUUCGGCACUUCUUGCU ..((((..(((.(((....))).)))..))))((((..((.((((((.---------------------------((...((.....))..)))))))).))....)))).......... ( -25.70) >DroSim_CAF1 6367 120 - 1 UUAUUGAAUGUUGUCGUUAGACUGCACACAAUGCCGCUAACAGCCGGGCAGGAGUUGUCGGUUUGGCUUCGUUUGCUUUUCCUUUCUGGCUAGCUGGCUAUUUUUUCGGCACUUCUUGCU .(((((..(((.(((....))).)))..)))))((((.....).)))(((((((.((((((..(((((..(((.(((..........))).))).))))).....)))))).))))))). ( -35.90) >DroYak_CAF1 6382 120 - 1 UUAUUGAAUGUUGUCGUUAGACUGCACACAAUGCCGCUAACAGUCGGGCAGGAGUUGUCGGUUUGGCUUCGUUUGCUUUUCCUUUCUGGCUAGCUGGCGAUUUUUUCAGCAUUUCAUACU .(((.((((((((..(((((((((...(((((.(((((........))).)).)))))))))))))).((((..(((...((.....))..)))..))))......)))))))).))).. ( -35.20) >consensus UUAUUGAAUGUUGUCGUUAGACUGCACACAAUGCCGCUAACAGCCGGGCAGGAGUUGUCGGUUUGGCUUCGUUUGCUUUUCCUUUCUGGCUAGCUGGCUAUUUUUUCGGCACUUCUUGCU ..((((..(((.(((....))).)))..))))((((((...(((((((.(((((..(((((.......)))...))..))))).)))))))))).))).........((((.....)))) (-27.17 = -28.80 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:32 2006