Locus 8658

Sequence ID 3R_DroMel_CAF1
Location 23,150,190 – 23,150,310
Length 120
Max. P 0.500000
window13904

overview

Window 4

Location 23,150,190 – 23,150,310
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -33.10
Consensus MFE -30.20
Energy contribution -30.95
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.91
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23150190 120 - 27905053
GAUCGAGGCUUGGCAUAAAUUCAAAAAGUACGAGUACGUGAACCCAACAGCCACUCGGCGGGAAAAUGUAGUAAAAGCAUUUUACAGUUUCAUUUUCCACGACUCAGUGCCGGCCACUGU
......((((.(((((..(((.....)))..((((.(((..........(((....))).((((((((..(((((.....))))).....))))))))))))))).)))))))))..... ( -34.10)
>DroSec_CAF1 1079 120 - 1
GAUCGAGGCUUGGCAUAAAUUCAAAAAGUACGAGUACGAGAACCCAACAGCCACUCGGCGGGAAAAUGUAGUAAAAGCAUUUUACAGUUUCAUUUUCCACGACUCAGUGCCGGCCACUGU
......((((.(((((...........(((....)))(((.........(((....))).((((((((..(((((.....))))).....))))))))....))).)))))))))..... ( -34.00)
>DroSim_CAF1 5485 120 - 1
GAUCGAGGCUUGGCAUAAAUUCAAAAAGUACGAGUACGAGAACCCAACAGCCACUCGGCGGGAAAAUGUAGUAAAAGCAUUUUACAGUUUCAUUUUCCACGACUCAGUGCCGGCCACUGU
......((((.(((((...........(((....)))(((.........(((....))).((((((((..(((((.....))))).....))))))))....))).)))))))))..... ( -34.00)
>DroYak_CAF1 5524 120 - 1
GAUCGAGGCUUGGCAUAAAUUCAAAAAGCACGACUACGAGUACCCAACAGCCACUCGGCGGGAAAAUGUAGUAAAAGCAUUUUACAGUUUCAUUUUCCACGACUCACUGCCGGCCACCGU
......((((.((((...........((.....))..((((........(((....))).((((((((..(((((.....))))).....))))))))...))))..))))))))..... ( -30.30)
>consensus
GAUCGAGGCUUGGCAUAAAUUCAAAAAGUACGAGUACGAGAACCCAACAGCCACUCGGCGGGAAAAUGUAGUAAAAGCAUUUUACAGUUUCAUUUUCCACGACUCAGUGCCGGCCACUGU
......((((.(((((...........(((....)))(((.........(((....))).((((((((..(((((.....))))).....))))))))....))).)))))))))..... (-30.20 = -30.95 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:30 2006