Locus 8652

Sequence ID 3R_DroMel_CAF1
Location 23,144,154 – 23,144,269
Length 115
Max. P 0.532026
window13895

overview

Window 5

Location 23,144,154 – 23,144,269
Length 115
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 78.72
Mean single sequence MFE -44.85
Consensus MFE -32.97
Energy contribution -32.37
Covariance contribution -0.61
Combinations/Pair 1.33
Mean z-score -0.97
Structure conservation index 0.74
SVM decision value -0.00
SVM RNA-class probability 0.532026
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23144154 115 - 27905053
AUGGAGCAGCUGGAGGAUAGUGUGGGGGAGGUCCUGCUGGGCUACGAAAUACGUGGCUUGGCCGCUUUACCUUUGGCCAACAACUUUCCACCGAUUGCGAAUGCCAUGAUGUGGC
.....((((.(((.(((.(((.(((.((((((.(.((..(((((((.....)))))))..)).)....))))))..)))...))).))).))).))))....(((((...))))) ( -44.20)
>DroPse_CAF1 1178 115 - 1
CUGCAGCAGCUGGAGGGGAGUGUGGCCGAGGUGCUGCUCGGCUACGAGAUUCGUGGCCUGGCUGCCCUCCCAAUGCCCUUUAAUUUCCCCCCCAUUGCGGGGGCCAUGAUGUGGC
(..((.((..(((((((.(...(((..((((.((.(((.(((((((.....))))))).))).))))))))).).)))))))......(((((.....)))))...)).))..). ( -52.90)
>DroEre_CAF1 1187 115 - 1
AUGGAGCAGCUGGAGAACAGUGUGGGGGAGGUGCUGCUGGGCCAUGAGAUUCGCGGCUUGGCUGCUUUACCUUUGGCCAACAACUUUCCACCCAUUGCAAAUGCCAUGAUGUGGC
.....(((((((.....))))(((((((((((((.((..((((.((.....)).))))..)).))...))).(((.....)))...))).))))))))....(((((...))))) ( -41.00)
>DroWil_CAF1 991 115 - 1
CUGAUGCAACUGGAGCAGAGUGUGGGAGAAGUUCUUUUGGGCUAUGACUUGCGUGGUUUGCCAGCUGUGCCCUUGCCAUUCAAUUUUCCUCCCAUUGCCGGGGCCAUGAUGUGGU
(((..((((..((((.((((((((((((.....)))..((((.((..((.(((.....))).))..))))))...))))...))))).))))..))))))).(((((...))))) ( -31.50)
>DroYak_CAF1 1197 115 - 1
AUGGAGCAGCUGGAGGAGAGUGUGGCGGAGUCGUUGCUGGGCUACGAAAUUCGCGGCUUGGCUGCCUUACCUUUGGCCAACAACUUUCCGCCGAUUGCAAAUGCCAUGAUGUGGC
.....((((.(((.(((((((.((((.(((..((.((..(((..((.....))..)))..)).))......))).))))...))))))).))).))))....(((((...))))) ( -46.10)
>DroPer_CAF1 1149 115 - 1
CUGCAGCAGCUGGAGGGGAGUGUGGCCGAGGUGCUGCUCGGCUACGAGAUUCGUGGCCUGGCUGCCCUGCCAAUGCCCUUUAAUUUCCCCCCCAUUGCGGGGGCCAUGAUGUGGC
(..((.((..(((((((.(...((((..(((.((.(((.(((((((.....))))))).))).))))))))).).)))))))......(((((.....)))))...)).))..). ( -53.40)
>consensus
AUGGAGCAGCUGGAGGAGAGUGUGGCGGAGGUGCUGCUGGGCUACGAGAUUCGUGGCUUGGCUGCCUUACCUUUGCCCAACAACUUUCCACCCAUUGCGAAGGCCAUGAUGUGGC
.....((((..((.(((((((..((....(((...(((((((((((.....))))))))))).)))...))..((.....))))))))).))..))))....(((((...))))) (-32.97 = -32.37 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:22 2006