Locus 865

Sequence ID 3R_DroMel_CAF1
Location 2,917,734 – 2,917,845
Length 111
Max. P 0.952765
window1377

overview

Window 7

Location 2,917,734 – 2,917,845
Length 111
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 84.23
Mean single sequence MFE -26.37
Consensus MFE -21.39
Energy contribution -21.83
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.62
Structure conservation index 0.81
SVM decision value 1.43
SVM RNA-class probability 0.952765
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2917734 111 - 27905053
UAUUUAUAGUAGAGCUGGAAAACCUCGAUGUUUUUCAGUUU-UUCAAUACAUUGAGCGUUUUGGAAAGCAAUCGAUGUUUUCUCCGCGCUAACACAGACACAUUAAUAGAGC
..(((((.(.(((((((((((((......))))))))))))-).).........(((((...((((((((.....))))))))..)))))...............))))).. ( -27.40)
>DroSec_CAF1 7985 101 - 1
-----------CAGCUGGAAAACUUCGAUGUUUUUCAGUUUUUUUAAAACAUUGAGAGUUUUCGAAAGCAAUCGAUGUUUUCUCCGCACUAACACAGACACUUUAAUACAGC
-----------..(((((((((((((((((((((...........)))))))))).)))))))(((((((.....)))))))..........................)))) ( -26.20)
>DroSim_CAF1 8949 107 - 1
UAUUUAUAGUAGAGCUGGAAAACUUCGAUGUUUUUCAGUUUUUUCAAAACAUUGAGAGUUUUCGAAAGCAAUCGAUGUUUCCUCCGCACUAACACAGACACUUUAAU-----
......(((((((((((((((((......)))))))))))))....(((((((((..((((....))))..))))))))).......))))................----- ( -25.50)
>consensus
UAUUUAUAGUAGAGCUGGAAAACUUCGAUGUUUUUCAGUUUUUUCAAAACAUUGAGAGUUUUCGAAAGCAAUCGAUGUUUUCUCCGCACUAACACAGACACUUUAAUA_AGC
.............((.(((((((.(((((((((((.((..(((((((....)))))))..)).)))))).))))).)))))).).))......................... (-21.39 = -21.83 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:07 2006