Locus 8646

Sequence ID 3R_DroMel_CAF1
Location 23,121,279 – 23,121,399
Length 120
Max. P 0.639810
window13887

overview

Window 7

Location 23,121,279 – 23,121,399
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 87.72
Mean single sequence MFE -49.39
Consensus MFE -43.13
Energy contribution -42.80
Covariance contribution -0.33
Combinations/Pair 1.32
Mean z-score -1.53
Structure conservation index 0.87
SVM decision value 0.22
SVM RNA-class probability 0.639810
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23121279 120 + 27905053
CGUCGAUCAUGAUUUUGACCAGCUCCUCGCGCGGUGCUCCGCAAUGGGAACUCAGUUCCGACUCCCGCGGCUGCAGCUCGAAAAUGGUGCGCAGCAGCUGCUCGGAUGCGGUGGUCAGGA
............(((((((((((.((......)).)).(((((...(((((...)))))...(((.((((((((.((.((.......)).)).))))))))..))))))))))))))))) ( -47.30)
>DroGri_CAF1 1143 120 + 1
CGUCAAUCAUGAUCUUCACCAGCUCUUCGCGUGGUGCCCCACAAUGGGUGCUCAGCUCGGACUCUCGCGGCUGCAGCUCAAAGAUGGUGCGUAGCAGCUGCUCCGAGGCGCUUGUGAGGA
............(((((((.(((.((((((..((..(((......)))..))..))..(((.....((((((((.(((((....))).))...))))))))))))))).))).))))))) ( -50.20)
>DroSec_CAF1 1024 120 + 1
CGUCGAUCAUGAUCUUGACCAGCUCCUCGCGCGGUGCUCCGCAAUGGGAGCUCAGUUCCGACUCCCGCGGCUGCAGCUCGAAAAUGGUGCGCAGCAGCUGCUCGGAUGCGGUGGUCAGGA
............(((((((((((((((...((((....))))...))))))......(((..(((.((((((((.((.((.......)).)).))))))))..)))..)))))))))))) ( -54.70)
>DroEre_CAF1 4057 120 + 1
CGUCGAUCAUGAUCUUGACCAGCUCCUCACGCGGUGCUCCGCAAUGGGAACUCAGUUCCGAUUCCCGCGGUUGCAGCUCAAAAAUGGUACGCAGCAGCUGCUCGGAUGCGGUGGUCAGGA
............(((((((((((.((......)).)).(((((((.(((((...))))).))(((.((((((((.((.............)).))))))))..))))))))))))))))) ( -46.82)
>DroYak_CAF1 1139 120 + 1
CAUCGAUCAUGAUCUUGACCAGCUCCUCGCGCGGUGCACCGCAAUGGGAGCUCAGUUCGGAUUCCCGCGGCUGCAGCUCGAAAAUGGUGCGCAGCAGCUGCUCGGAAGCGGUGGUCAGGA
............(((((((((((((((...((((....))))...)))))).....(((..((((.((((((((.((.((.......)).)).))))))))..)))).)))))))))))) ( -53.60)
>DroAna_CAF1 1905 120 + 1
CAUCAAUCAUAAUUUUCACCAGCUCCUCGCGAGGCGCUCCGCAGUGUGAGCUCAGCUCCGAUUCCCGCGGCUGAAGCUCAAAGAUGGUGCGCAGAAGUUGUUCGGAGGCAGUGGUCAGAA
............((((.((((.((((((.((((((((.(((.....(((((((((((.((.....)).))))).))))))....))).))))........)))))))).)))))).)))) ( -43.70)
>consensus
CGUCGAUCAUGAUCUUGACCAGCUCCUCGCGCGGUGCUCCGCAAUGGGAGCUCAGUUCCGACUCCCGCGGCUGCAGCUCAAAAAUGGUGCGCAGCAGCUGCUCGGAUGCGGUGGUCAGGA
............(((((((((((((((...((((....))))...))))))...(((((((.....((((((((.((.((.......)).)).))))))))))))).))..))))))))) (-43.13 = -42.80 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:14 2006