| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,069,730 – 23,069,820 |
| Length | 90 |
| Max. P | 0.925127 |
| Location | 23,069,730 – 23,069,820 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 80.57 |
| Mean single sequence MFE | -24.26 |
| Consensus MFE | -17.33 |
| Energy contribution | -18.45 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23069730 90 - 27905053 GUGGCUGACCAUAUGUUCGGUUGUUUAUUUACGUGUGGUGUG-------CACUUUUUAAGAAAUCCCUGAAACUCAUAGGGAUUGCAAUAUUAAUAC ...((..(((((((((..............)))))))))..)-------).........(.((((((((.......)))))))).)........... ( -21.34) >DroSec_CAF1 4743 90 - 1 GUUGCAGACCAUAUGUUGGGUAGUUUAUUUAAGUGUGGUUCG-------CACUUUUUAGGAAAUCCCUGAAAAUCAUAGGGAUUGCGAUAUUAAUAC (((((((.((.((((..(((...(((....(((((((...))-------))))).....)))..))).......)))).)).)))))))........ ( -23.10) >DroSim_CAF1 2913 87 - 1 -UUGCAGACCAUAUGUUGGGUAGUUUAUUUACGUGUGGUUCG-------CACUUUU-AGG-AAUCCCUGAAAAUCAUAGGGAUUGCGAUAUUAAUAC -.(((..(((((((((.(((((...))))))))))))))..)-------)).....-.(.-((((((((.......)))))))).)........... ( -26.70) >DroYak_CAF1 3990 96 - 1 GUUGCAAGCCAUAUGUCGGGUUGUUUAUUUACGUGUGCUUUCUAAACCUAACUUGUUAAGGAAUCCCUGAAACUCA-GGGGUUUGCAAUGCAAAUAU ((((((((((((((((.((((.....))))))))))).(((((.(((.......))).))))).(((((.....))-))))))))))))........ ( -25.90) >consensus GUUGCAGACCAUAUGUUGGGUAGUUUAUUUACGUGUGGUUCG_______CACUUUUUAAGAAAUCCCUGAAAAUCAUAGGGAUUGCAAUAUUAAUAC (((((.((((((((((..(........)..)))))))))).....................((((((((.......)))))))))))))........ (-17.33 = -18.45 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:50 2006