a score=0
s 3R_DroMel_CAF1 23064508 99 + 27905053 GGCGCUGGGCGCAGGCGCGG---CACCUCCGGUGGUGGGCGUAACCGGAA-UGGAGAC--ACUCGAGGAUUGGGAGUCUUCACUCCUUUCGCGGCGC---ACCAGCAG
s DroVir_CAF1 20197 84 + 1 ---AUUGGGCGCAGGCGUUGC---CGUUGACGUUGG---CGUUGC------UGGCGAC--G-UUGACG---CAGAGUCGUCGCUUUUAUCAUGGCGC---ACCAACAA
s DroPse_CAF1 11395 102 + 1 ---GCUGGGCGCAGGCGCUGGUUCGGCUCCCGUUGGGGGCGGAGGCGUUGUUGGCGACGCAGUUGGCG---AGGAGUCGUAGCUUCUAUCAUGGCGAACAACCAGCAA
s DroEre_CAF1 9025 99 + 1 GGCGUUGGGCGCAGGCGCGG---CACCUCCAGUGGGGGGCGUAACCGGAA-CGGAGAC--AUUCGAGGAUUGGGAGUCUUCGCUCCUUUCGCGGCGC---ACCAGCAG
s DroYak_CAF1 9036 99 + 1 GACGUUGGGCGCAGGCGCGG---CACCUCCAGUGGGGGGCGUAACCGAAA-CGGAGAC--ACUCGAGGAUUGGGAGUCUUCGCUCCUUUCGCGACGC---ACCAGCAG
s DroPer_CAF1 13991 102 + 1 ---GCUGGGCGCAGGCGCUGGUUCGGCUCCCGUUGGGGGCGGAGGCGUUGUUGGCGACGCAGUUGGCG---AGGAGUCGUAGCUUCUAUCAUGGCGAACAACCAGCAA