| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,905,782 – 2,905,884 |
| Length | 102 |
| Max. P | 0.508954 |
| Location | 2,905,782 – 2,905,884 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 77.97 |
| Mean single sequence MFE | -49.38 |
| Consensus MFE | -26.66 |
| Energy contribution | -27.33 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.54 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508954 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2905782 102 + 27905053 GCUCCGCCGCGGCGGGCUCCACCA---GCAAAACGCUGCUGUCCGCCCGUUUUUCGGGCGCCACCUGGUCCGCCGCGGGCGGCUUGCGGCUUUUUUUGCGAGCGU ....((((((((((((((....((---(((......)))))..((((((.....))))))......)))))))))).))))((((((((......)))))))).. ( -55.90) >DroVir_CAF1 3066 105 + 1 CCGCCGCCACGGCGUGUUCCACCAGUGCCAAAUCGCUGUUGUCCGCCGGGCCGGCGAGUUCCACUUGGUCCACCACGACCACCCUGUGGUUUCUUCUGUGUGCGC .(((((((.(((((.(...((.(((((......))))).)).)))))))).)))))((..((((.(((((......)))))....))))...))........... ( -39.50) >DroSec_CAF1 1818 102 + 1 GCUCCGCCGCGGCGGGCUCCACCG---GUAAAACGCUGCUGGCCGCCCGGUUUACGGGCGCCACCUGGUCCGCCGCGGGCGGCUUGCGGCUUUUUUUGCGAGCGA ....((((((((((((((...(((---(((......)))))).((((((.....))))))......)))))))))).))))((((((((......)))))))).. ( -57.40) >DroSim_CAF1 3089 102 + 1 GCUCCGCCGCGGCGGGCUCCACCG---GCAAAACGCUGCUGGCCGCCCGGUUUACGGGCGCCACCUGGUCCGCCGCGGGCGGCUUGCGGCUUUUUUUGCGAGCGA ....((((((((((((((...(((---(((......)))))).((((((.....))))))......)))))))))).))))((((((((......)))))))).. ( -59.40) >DroEre_CAF1 5926 102 + 1 GCGCCGCCACGGCGUGCACCACCA---GCAGUACGCUGCUGGCCGCCCGGCUUUCGGGCGCCACCUGGUCCGCCUCGGGCGGCUUGCGGCUUUUUUUGCGAGCGA ((((((((..((((.(.(((((((---((((....))))))).((((((.....)))))).....)))))))))...))))))((((((......)))))))).. ( -55.70) >DroMoj_CAF1 3054 105 + 1 CCGCCUCCACGACGUGAUCCUCCAGUACCAAAACGCUGUUGACCGGCAGGCCGGCGAGCUCCACCCGGCCCACCGCGACCACCCUGCGGUUUUUUCUGUGAGCGC .(((.((...)).)))...((((((.........((((.....)))).((((((.(.......))))))).((((((.......)))))).....))).)))... ( -28.40) >consensus GCGCCGCCACGGCGGGCUCCACCA___GCAAAACGCUGCUGGCCGCCCGGCUUACGGGCGCCACCUGGUCCGCCGCGGGCGGCUUGCGGCUUUUUUUGCGAGCGA ....((((((((.(.....).))...........(((((...(((((((......(((.....)))((....)).)))))))...))))).......))).))). (-26.66 = -27.33 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:01 2006