| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,902,640 – 2,902,740 |
| Length | 100 |
| Max. P | 0.684057 |
| Location | 2,902,640 – 2,902,740 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.38 |
| Mean single sequence MFE | -38.73 |
| Consensus MFE | -27.70 |
| Energy contribution | -28.32 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2902640 100 - 27905053 CCGAGAAGAUAUUGGUGUGUCCGCCGCCUGGGGGCUUCAGCACUCGGCUGGAGGGACGGGCACUGGUGGUCAGGCCGAUUUUCAGCUCGGUGGAUGUCAU-------------------- (((((..((.((((((.((.((((((((((....(((((((.....)))))))...)))))...))))).)).))))))..))..)))))..........-------------------- ( -47.10) >DroVir_CAF1 1 100 - 1 CCGAAAAGAUGUUAGUAUGUCCACCGCCUGGAGGCUUCAGUACGCGACUGGAAGGACGAGCGCUGGUACCCAAGCCAAUUUUCAAUUCGGUGGAUGUCAU-------------------- ..............(.((((((((((..(((((((((..(((((((.((.(.....).)))))..))))..)))))....))))...)))))))))))..-------------------- ( -31.20) >DroGri_CAF1 1 100 - 1 CCGAAAAGAUGUUGGUGUGUCCCCCACCAGGUGGUUGCAGGACGCGGCUAGAUGGACGGGUGGUGGCGGUCAAGCCAAUUUUCAGUUCGGUGGAUGUCAU-------------------- (((((..((.((((((.((.((.((((((..(((((((.....)))))))(.....)...)))))).)).)).))))))..))..)))))..........-------------------- ( -36.20) >DroEre_CAF1 2593 120 - 1 CCGAGAAGAUAUUGGUGUGUCCGCCGCCUGGGGGCUUCAGCACUCGGCUGGAGGGACGGGCACUGGUGGUCAGGCCGAUUUUCAGCUCGGUGGAUGUCAUUUUGGCGUUGCUGGUUGUGG (((((..((.((((((.((.((((((((((....(((((((.....)))))))...)))))...))))).)).))))))..))..)))))..((((((.....))))))........... ( -52.00) >DroMoj_CAF1 1 100 - 1 CCGAAAAGAUGUUCGUAUGUCCGCCACCUGGGGGUUUGAGUACACGGCUGGAAGGACGAGCACUGGUACUCAAGCCAAUUUUCAGUUCGGUAGAUGUCAU-------------------- .((((......)))).(((((..((..((((((((((((((((...(((.(.....).)))....)))))))))))....)))))...))..)))))...-------------------- ( -32.30) >DroAna_CAF1 1 100 - 1 CCGAGAAGAUGUUGGUAUGGCCGCCGCCUGGUGGCUUCAGCACUCGGCUGGAGGGACGAGCACUGCCGGUAAGUCCAAUUUUAAGCUCGGUGGAUGUCAU-------------------- (((((.....(((((....((((.((.((.((..(((((((.....)))))))..)).))...)).))))....)))))......)))))..........-------------------- ( -33.60) >consensus CCGAAAAGAUGUUGGUAUGUCCGCCGCCUGGGGGCUUCAGCACUCGGCUGGAGGGACGAGCACUGGUGGUCAAGCCAAUUUUCAGCUCGGUGGAUGUCAU____________________ (((((..((.((((((.((.((((((((....)))((((((.....))))))............))))).)).))))))..))..))))).............................. (-27.70 = -28.32 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:00 2006