Locus 8588

Sequence ID 3R_DroMel_CAF1
Location 22,979,939 – 22,980,035
Length 96
Max. P 0.721711
window13793

overview

Window 3

Location 22,979,939 – 22,980,035
Length 96
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.75
Mean single sequence MFE -39.92
Consensus MFE -29.59
Energy contribution -29.90
Covariance contribution 0.31
Combinations/Pair 1.12
Mean z-score -1.82
Structure conservation index 0.74
SVM decision value 0.40
SVM RNA-class probability 0.721711
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22979939 96 - 27905053
GAUAGUGUCGAGCGGUGGGAACUGUUGCUGCUGCCACAGCAGUCUUUCCUGUUGCUGAAGUGCCGCAUCGACACAAUUUGCCCACAGUUCCACAUA------------------------
....((((.((((.(((((...(((((.(((.(((.((((((.(......)))))))..).)).))).))))).......))))).)))).)))).------------------------ ( -34.20)
>DroSec_CAF1 10826 120 - 1
GAUAAUGGCGAGGUGUGGGAACUGUUGCUGCUGCCACAGCAGUCUUUCCUGUUGCUGAAGUGCCGCAUCGGCACAAUUUACUCACAGUUCCACAUAAGCUGCAAAUCGCAAAAGUGCAUU
(((..((((...((((((.((((((.(((((((...)))))))................((((((...)))))).........))))))))))))..))))...)))(((....)))... ( -40.60)
>DroSim_CAF1 3964 120 - 1
GGUAGUGGCGAGCGGUGGGAACUGUUGCUGCUGCCACAGCAGUCUUUCCUGUUGCUGAAGUGCCGCAUCGGCACAAUUUGCCCACAGUUCCACAUAAGCUGCAAAUUGCAAAAGUGCAUU
(((((..((.((((((....))))))))..))))).((((((.(......)))))))..((((((...))))))(((((((....((((.......)))))))))))(((....)))... ( -45.20)
>DroEre_CAF1 4753 120 - 1
GAUAGUGUCGAGCUGUGGGAACUGUUGCUGCUGCCACCGCAGUCUUUCCUGUUGCUGAUGUGCCGCAUCGGCACAAUUUGCCCACCGUUCCACAUAAGCUGCGAAUUGCAAAAGUGCAUU
....((((.((((.(((((....((((..(((((....))))).........((((((((.....))))))))))))...))))).)))).))))...........((((....)))).. ( -39.40)
>DroYak_CAF1 11389 120 - 1
GAUAGUGUCGAGCGGUGGGAACUGUUGCCGCUGCCACCGUAGUCUUUCCUGUUGCUGAUGUGCUGCAUCGGCAAAAUUUGCCCACAGUUCCACAUAAGCUGCGAAUUGCAAAAGUGCAUU
.......((((((.(((((((((((.((.(((((....)))))........(((((((((.....))))))))).....))..)))))))).)))..))).)))..((((....)))).. ( -40.20)
>consensus
GAUAGUGUCGAGCGGUGGGAACUGUUGCUGCUGCCACAGCAGUCUUUCCUGUUGCUGAAGUGCCGCAUCGGCACAAUUUGCCCACAGUUCCACAUAAGCUGCAAAUUGCAAAAGUGCAUU
....((((.((((.(((((......(((((.((((((..((((..(....)..))))..)))..))).))))).......))))).)))).))))............(((....)))... (-29.59 = -29.90 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:44 2006