Locus 858

Sequence ID 3R_DroMel_CAF1
Location 2,902,115 – 2,902,216
Length 101
Max. P 0.559192
window1369

overview

Window 9

Location 2,902,115 – 2,902,216
Length 101
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 73.41
Mean single sequence MFE -22.27
Consensus MFE -12.05
Energy contribution -11.42
Covariance contribution -0.63
Combinations/Pair 1.30
Mean z-score -1.75
Structure conservation index 0.54
SVM decision value 0.05
SVM RNA-class probability 0.559192
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2902115 101 + 27905053
-------------------UUAGUUUCUUAAUUGACCACUCUGACUAUUGGCACUUUAUAUCACCAAAGGACUUUAUUGUUUGAACUGUAGUCAAUGGUCAAUGCCCAAACGCACUUUUU
-------------------...((((....((((((((...((((((((((............)))).((((......))))......)))))).))))))))....))))......... ( -21.50)
>DroSec_CAF1 8842 97 + 1
-----------------------UUGCUUAAUUGACCAGUCUGACUAUUGGCACUUAUCAUCACCGACAGACUUUAUUGUUUAAACCAUGGUUAAUGGCCAAUGCCCAAACGCACUUUUU
-----------------------.(((...(((((((((((((....((((............)))))))))((((.....))))...))))))))(((....))).....)))...... ( -18.90)
>DroSim_CAF1 9953 101 + 1
-------------------UUAGUUGCUUAAUUGACCAGUCUGACUAUUGGCACUUAUCAUCAACAACAGACUUUAUUGUUUGAACCGUGGUCAAUGGCCAAUGCCCAAACGCACUUUUC
-------------------..(((.((...(((((((((((........)))...............(((((......))))).....))))))))(((....))).....))))).... ( -22.60)
>DroYak_CAF1 9879 116 + 1
UAGUCAAUAAACUAGAAAAUUA-UUGCAUUGCUUUCCACUCUGAUUGUUGGCUCUUAUCAUCGCCGACAGACUUUUUAGUUUAAACUGGAGUCAAUGG---GUGCUCAAACGCACUUUUU
((((......))))........-...(((((..(((((........((((((..........))))))(((((....)))))....))))).)))))(---((((......))))).... ( -26.10)
>consensus
___________________UUA_UUGCUUAAUUGACCACUCUGACUAUUGGCACUUAUCAUCACCAACAGACUUUAUUGUUUAAACCGUAGUCAAUGGCCAAUGCCCAAACGCACUUUUU
..............................((((.(((...((((((((((............)))).((((......))))......)))))).))).))))((......))....... (-12.05 = -11.42 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:59 2006