| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,893,016 – 2,893,135 |
| Length | 119 |
| Max. P | 0.785728 |
| Location | 2,893,016 – 2,893,135 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.00 |
| Mean single sequence MFE | -30.43 |
| Consensus MFE | -18.65 |
| Energy contribution | -19.10 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2893016 119 - 27905053 UUGUAAUAGAGAUGAAAAUCUUUCGAUGUCGUUCUCGUGCUCACGUGAGUCACGAGCAGGGCUGGAACGUUAAUUCUCGGUCCUCGGUCUAGCACUUACAAAACUUUUCUGUAU-UGAAA ((((((.((((((....)))))).(((......(((((((((....))).)))))).((((((((((......))).)))))))..)))......))))))....((((.....-.)))) ( -32.00) >DroSim_CAF1 551 112 - 1 UUGUAUUAGAGAUGAAAAUCGUUCGAUGUCGUUCUCGUGCUCACGUGAGUCACGAGCAGGGUUGGAACGUUAAGUCUC-------GGUCUAGCACUCACAAAACUUUUCUGUAA-UAAAA ...(((((.(((.(((.(((....)))....)))((((((((....))).)))))((.((..((..((.....))..)-------)..)).))..............))).)))-))... ( -26.70) >DroYak_CAF1 464 93 - 1 UUGUAAUAGAGAUGAAAAUUGUUCGAUGGCGUCUUCGUGUCCACGUGAGUCACGAGCAGGGCUGGAACGUCAA---------------------------AAACAUCUCUGUAUGCAAAA ((((((((((((((....(((((((.((((.((..(((....))).)))))))))))))(((......)))..---------------------------...))))))))).))))).. ( -32.60) >consensus UUGUAAUAGAGAUGAAAAUCGUUCGAUGUCGUUCUCGUGCUCACGUGAGUCACGAGCAGGGCUGGAACGUUAA_UCUC_______GGUCUAGCACU_ACAAAACUUUUCUGUAU_UAAAA .....((((((((....)))((((.(.(((.(.(((((((((....))).)))))).).)))).)))).......................................)))))........ (-18.65 = -19.10 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:53 2006