Locus 8539

Sequence ID 3R_DroMel_CAF1
Location 22,802,173 – 22,802,274
Length 101
Max. P 0.945682
window13720

overview

Window 0

Location 22,802,173 – 22,802,274
Length 101
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 79.12
Mean single sequence MFE -40.90
Consensus MFE -29.45
Energy contribution -29.17
Covariance contribution -0.29
Combinations/Pair 1.28
Mean z-score -2.19
Structure conservation index 0.72
SVM decision value 1.36
SVM RNA-class probability 0.945682
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22802173 101 - 27905053
ACAC---GUUUUAUUUGAAGCGUCGCUGCGGCAAUGUUGGGCUCUCGGGCGGCGUGUCACCGCCAGC--UCCUGC-GCCGCCUCCCACGGCGAUAUGCUGCAGCGAA
...(---(((((....))))))(((((((((((.((((.(((.(..((((((((......)))).))--))..).-)))(((......)))))))))))))))))). ( -48.70)
>DroPse_CAF1 11937 104 - 1
AGAA---AUAUUAUUUAAAGCGUCGAUGCGGCAUGGUUGGACUCUCGGGCGGUGUAUCCCCGCUGGCAGUGCUGCUGCCACCCCCAAUGACAAUCUGUUGCAGCGAA
....---...............(((.(((((((.(((((.......((((((.......))))((((((.....)))))).)).......)))))))))))).))). ( -34.04)
>DroSim_CAF1 11138 101 - 1
ACAC---GUUUUAUUUGAAGCGUCGCUGCGGCAAUGUUGGGCUCUCGGGCGGCGUAUCACCGCCAGC--UCCUGC-UCCGCCACCGACGGCGAUAUGCUGCAGCGAA
...(---(((((....))))))(((((((((((.....((((....((((((((......)))).))--))..))-))((((......))))...))))))))))). ( -47.40)
>DroWil_CAF1 9668 107 - 1
CCAAAUAUUAUUAUUUAAGUCGUCGCUGUGGCAAUGUUGGACUCUCUGGCGGUGUGUCUCCGCUGCCAGUGCUGCUGCCGGCUCCAACGACAAUAUGUUGCAGCGAA
..(((((....)))))......((((((..(((.(((((((....(((((((((......))))))))).((((....)))))))))))......)))..)))))). ( -41.10)
>DroAna_CAF1 11066 101 - 1
AAAA---GUAUUAUUUAAAGCGUCGCUGCGGCAAAGUCGGACUCUCAGGCGGUGUGUCCCCGCUGGC--ACUACC-GCCGCCCCCAACGACGAUUUGUUGCAGGGAG
....---...............((.(((((((((.((((........(((((((((((......)))--)).)))-)))........))))...))))))))).)). ( -40.09)
>DroPer_CAF1 12698 104 - 1
AGAA---AUAUUAUUUAAAGCGUCGAUGCGGCAUGGUUGGACUCUCGGGCGGUGUAUCCCCGCUGGCAGUGCUGCUGCCACCCCCAAUGACAAUCUGUUGCAGCGAA
....---...............(((.(((((((.(((((.......((((((.......))))((((((.....)))))).)).......)))))))))))).))). ( -34.04)
>consensus
ACAA___GUAUUAUUUAAAGCGUCGCUGCGGCAAUGUUGGACUCUCGGGCGGUGUAUCCCCGCUGGC__UCCUGC_GCCGCCCCCAACGACAAUAUGUUGCAGCGAA
......................(((((((((((.(((((........(((((.......)))))((((.......))))...........)))))))))))))))). (-29.45 = -29.17 +  -0.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:34 2006