| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,890,764 – 2,890,884 |
| Length | 120 |
| Max. P | 0.907964 |
| Location | 2,890,764 – 2,890,884 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.38 |
| Mean single sequence MFE | -39.35 |
| Consensus MFE | -19.45 |
| Energy contribution | -19.23 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.907964 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2890764 120 - 27905053 UUAUCGCUUUGGACUACGACCUGCAUGUGGAGUGCGAGGUGAGCGGUCCGCACCGCAAUCUCACUGGCAAGGUGCCAAUCACCUUGGGCACUAUUCCAUUGGCUGGCGUACGGCCACCUA .........(((..((((.((.((..((((((((((((((..(((((....))))).))))).....(((((((.....))))))).))))...)))))..)).))))))...))).... ( -46.30) >DroVir_CAF1 3884 118 - 1 UAAUUGCUCUAGACUAUGAUUUGCAUGUGGAGUGCGAUGUAAGUGGACCACAUCGCAAUCUAACCGGCAAAGUGCCAAUUACCCUCGGCACAAUACCACUGGCUGCUUUAAAACCACA-- .....((.((((.......(((((...((((.((((((((.........)))))))).))))....)))))(((((..........))))).......))))..))............-- ( -33.30) >DroGri_CAF1 350 118 - 1 UCAUUUCUUUGGACUAUGACUUGCACGUGGAGUGCGUUGUUAGUGGACCACAUAGUAAUCUCACCGGUAAAGUGCCAAUUACACUUGGCACAAUACCACUGGCUUCCGUACAGCCACU-- ((((.((....))..)))).......((((.(((((..(((((((((((....((....))....)))...(((((((......)))))))....))))))))...)))))..)))).-- ( -37.50) >DroWil_CAF1 1759 120 - 1 UCAUUGCCUUGGAUUAUGAUGUGCAUGUCGAGUGCGAAGUGAGUGGAGCUCAUCGUAAUCUGUCGGGUAAAAUACCCAUAACAUUGGGCACUAUUCCAUUGGCUGGUAUUAAGCCACCAA ....(((((.((((((((((.(((((.....)))))....(((.....)))))))))))))...(((((...)))))........)))))........((((.((((.....)))))))) ( -36.70) >DroMoj_CAF1 348 118 - 1 UCAUCGCGUUGGACUAUGAUUUGCAUGUCGAGUGUGAUGUAAGUGGACCGCAUCGUAAUCUCACUGGCAAAGUGCCCAUCACGUUGGGCACCAUUCCGUUGGCUUCCGUAAAGCCACC-- .(((((((((.(((.(((.....)))))).)))))))))..((((((..((...))..)).))))((....(((((((......)))))))....))..((((((.....))))))..-- ( -38.20) >DroAna_CAF1 2407 119 - 1 UCAUCGCCCUUGACUACGAUCUGCAUGUAGAAUGUGAUGUUAGUGGGCCACAUAGAAAUCUCACUGGCAAGGUGCCUAUCACAUUAGGCACUAUUCCACUAUCGGGCGUGAAGCCGCUG- (((.(((((.....((((.((((....)))).))))..(.((((((((((...((....))...))))..((((((((......))))))))...)))))).)))))))))........- ( -44.10) >consensus UCAUCGCUUUGGACUAUGAUUUGCAUGUGGAGUGCGAUGUAAGUGGACCACAUCGUAAUCUCACUGGCAAAGUGCCAAUCACAUUGGGCACUAUUCCACUGGCUGCCGUAAAGCCACC__ .........(((..((((....((((.....))))...((.(((((............((.....))....(((((((......)))))))....))))).))...))))...))).... (-19.45 = -19.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:52 2006