Locus 850

Sequence ID 3R_DroMel_CAF1
Location 2,887,221 – 2,887,328
Length 107
Max. P 0.970397
window1353

overview

Window 3

Location 2,887,221 – 2,887,328
Length 107
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 82.52
Mean single sequence MFE -28.22
Consensus MFE -19.42
Energy contribution -19.20
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.88
Structure conservation index 0.69
SVM decision value 1.66
SVM RNA-class probability 0.970397
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2887221 107 - 27905053
GAUCCUCUUUUUUGCAAGGAUCUUUCUUUUUGCAGGGGUCAACUUUCUUGGGUUUUUUAGCGCAAGGAUCUUUGGGGCAACAGCUUUUUUUCUCGCAAGGAUCUUCU
((((((......((((((((......))))))))))))))......((((.(((....))).))))(((((((((((.((........)).))).)))))))).... ( -29.60)
>DroEre_CAF1 611 95 - 1
GAUCCUCUUUUUUGCAAGGAUCUUUUUUCUUGCAGGGGUCGACUUUCUUGGGUUUUUUGGCACAA---------GGGCAACAGCAU---UUCUCGCAAGGAUCUUGU
((((((...(((((((((((......)))))))))))(.(((...(((((.(((....))).)))---------))((....))..---...)))).)))))).... ( -26.50)
>DroYak_CAF1 17324 89 - 1
GAUCCUCUUUUUUGCAAGGAUCUUUUUUCUUGCAGGGGUCAACUUUCUUGCGUUUUUUU---------------GGGCAACAGCAU---UUCACGCAAGGAUCUUCU
((((((......((((((((......))))))))))))))....(((((((((......---------------.(....).....---...)))))))))...... ( -28.56)
>consensus
GAUCCUCUUUUUUGCAAGGAUCUUUUUUCUUGCAGGGGUCAACUUUCUUGGGUUUUUUAGC_CAA_________GGGCAACAGCAU___UUCUCGCAAGGAUCUUCU
((((((..((((((((((((......)))))))))))).....................................(....)................)))))).... (-19.42 = -19.20 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:43 2006