Locus 85

Sequence ID 3R_DroMel_CAF1
Location 521,531 – 521,621
Length 90
Max. P 0.639890
window145

overview

Window 5

Location 521,531 – 521,621
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 86.36
Mean single sequence MFE -22.67
Consensus MFE -20.23
Energy contribution -19.91
Covariance contribution -0.33
Combinations/Pair 1.14
Mean z-score -1.45
Structure conservation index 0.89
SVM decision value 0.22
SVM RNA-class probability 0.639890
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 521531 90 - 27905053
UGUGGUUAUAUAGAGGGAAUAUUUUCUGUCCUGAAGAGCGGAGGGUAAAUUCCUUGUCCUUCCAAUUGUCCUUUUUGUUGCCUUUGGGCC
...(((.(((.(((((((...(((((......)))))..(((((((((.....))).)))))).....)))))))))).)))........ ( -22.60)
>DroSec_CAF1 47689 84 - 1
UGUCUUCAUAUUGAGGGAAUAUUCUCUGUUCCGAAGAACGGAGUGUAAAUUCCUCG------CAAUUGUCCUUGUUGUUGUCUUUGGGCC
.((((.......((((((.(((.((((((((....)))))))).)))..))))))(------((((.......))))).......)))). ( -22.70)
>DroSim_CAF1 47950 84 - 1
UGUCUUUAUAUUGAGGGAAUAUUCUCUGUUCCGAAGAACGGAGUGUAAAUUCCUCG------CAAUUGUCCUUGUUGUUGUCUUUGGGCC
.((((.......((((((.(((.((((((((....)))))))).)))..))))))(------((((.......))))).......)))). ( -22.70)
>consensus
UGUCUUUAUAUUGAGGGAAUAUUCUCUGUUCCGAAGAACGGAGUGUAAAUUCCUCG______CAAUUGUCCUUGUUGUUGUCUUUGGGCC
............((((((.(((.((((((((....)))))))).)))..))))))............((((..............)))). (-20.23 = -19.91 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:39 2006