Locus 8492

Sequence ID 3R_DroMel_CAF1
Location 22,674,041 – 22,674,142
Length 101
Max. P 0.733506
window13662

overview

Window 2

Location 22,674,041 – 22,674,142
Length 101
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 76.36
Mean single sequence MFE -26.45
Consensus MFE -15.31
Energy contribution -15.98
Covariance contribution 0.67
Combinations/Pair 1.20
Mean z-score -1.64
Structure conservation index 0.58
SVM decision value 0.43
SVM RNA-class probability 0.733506
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22674041 101 - 27905053
UU---GUGUGAAAACGUAGGAAUCGCAUUAGAUUUGGCGUACAGCCCAAUGCACUUUU--CGUGCCGGGCACUUCUUGCUGCUCCUCCAUCACAGCACCACUCCAG
..---(((.(((.((((..(((((......))))).))))...((((...((((....--.)))).))))..))).(((((...........))))).)))..... ( -27.00)
>DroSec_CAF1 121650 101 - 1
UU---GUGUGAAAACGUAGGAAUCGCAUUAGAUUUGGCGUACAGCCCAAUGCACUUUU--CGUGCCGGGCACUUCUUGCUGCUUCACCAUCACAGCACCAUUUCAC
..---..((((((((((..(((((......))))).))))...((((...((((....--.)))).))))......(((((...........)))))...)))))) ( -29.00)
>DroSim_CAF1 123076 101 - 1
UU---GUGUGAAAACGUAGGAAUCGCAUUAGAUUUGGCGUACAGCCCAAUGCACUUUU--CGUGCCGGGCACUUCUUGCUGCUUCACCAUCACAGCACCAUUUCAC
..---..((((((((((..(((((......))))).))))...((((...((((....--.)))).))))......(((((...........)))))...)))))) ( -29.00)
>DroEre_CAF1 131861 99 - 1
UU---GUGUGAAAACGUAGGAAUCGCAUUAGAUUUGGCGUACAGCCCAAUGCACUUUC--CGUGCUGGGCACUUCUUGCUGCACCACCAGCAC--CAUCACACUAU
..---((((((..((((..(((((......))))).))))...(((((..((((....--.)))))))))......(((((......))))).--..))))))... ( -35.00)
>DroYak_CAF1 126203 87 - 1
UU---GUGUGAAAACGUAGCAAUCGUAUUAGAUUUGGCAUACAGCCCAAUGCACUUUC--CGUGCCGGGCACUUCUUGCAACAC--------------CCCACCAU
((---(((.(((...(((((.(((......)))...)).))).((((...((((....--.)))).))))..))).)))))...--------------........ ( -21.10)
>DroPer_CAF1 141275 89 - 1
UUUGCCUGUGAAAAUAGGAAAAUCGCAUUAGAAUUGGCGCACAGCCCAAUGCACUUUCUUCGCGCUUAUCCCUUCGCUCCGCUGC-----------------CCUG
...((..(((((....(((.((.(((...((((..((.(((........))).))))))..))).)).))).)))))...))...-----------------.... ( -17.60)
>consensus
UU___GUGUGAAAACGUAGGAAUCGCAUUAGAUUUGGCGUACAGCCCAAUGCACUUUC__CGUGCCGGGCACUUCUUGCUGCUCCACCAUCAC__CACCACUCCAC
.......((....))(((((((.(((..........)))....((((...((((.......)))).))))..)))))))........................... (-15.31 = -15.98 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:39 2006