Locus 848

Sequence ID 3R_DroMel_CAF1
Location 2,883,015 – 2,883,132
Length 117
Max. P 0.716741
window1349

overview

Window 9

Location 2,883,015 – 2,883,132
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.14
Mean single sequence MFE -40.12
Consensus MFE -35.30
Energy contribution -35.37
Covariance contribution 0.06
Combinations/Pair 1.11
Mean z-score -1.53
Structure conservation index 0.88
SVM decision value 0.39
SVM RNA-class probability 0.716741
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2883015 117 - 27905053
AGAUCUUGUCAAAAAGGUGUUGGAUGAGGCUCUUUUCAACUG---GUGGUUUCACCGGCACAGCAGGGAUCACUGGGAUCUCACCCGUAGCCUUGUCCCGGAGCUUCAGGGCUAGCUCCC
..(((((......)))))...(((..((((((.......(((---(((....)))))).......((((((.....))))))....).)))))..))).((((((........)))))). ( -42.30)
>DroSec_CAF1 4704 117 - 1
AGAUCUUGUCAAAAAAGUGUUGGAUGAAGCUUUUUUCAACUC---GUGGUUUCACCGGCACAGCAGGGAUCACUGGGAUCUCACCCGUAGCUUUGUCCCGGAGCUUCAGGGCUAGCUCCC
.((((((.........(((((((.(((((((...........---..))))))))))))))....))))))...((((.((..(((..(((((((...)))))))...)))..)).)))) ( -39.44)
>DroSim_CAF1 3396 117 - 1
AGAUCUUGUCAAAAAAGUGUUGGAUGAAGCUUUUUUCAACUC---GUGGUUUCACCGGCACAGCAGGGAUCACUGGGAUCUCACCCGUAGCUUUGUCCCGGAGCUUCAGGGCUAGCUCCC
.((((((.........(((((((.(((((((...........---..))))))))))))))....))))))...((((.((..(((..(((((((...)))))))...)))..)).)))) ( -39.44)
>DroEre_CAF1 4693 117 - 1
AGAUCUUGUCAAAAAGGUGUUGCAUGAAGGUUUUUUCAACUUUCAUUGGCUUCAGUGGCACUGCAG---UCGCCGGGAUCUCACCCGUAGCUUUGUCCCGGAGCUUCAGGGCUAGCUCCC
...............(((((((((((((((((.....))))))))...(((.....)))..)))))---.))))((((.((..(((..(((((((...)))))))...)))..)).)))) ( -39.30)
>consensus
AGAUCUUGUCAAAAAAGUGUUGGAUGAAGCUUUUUUCAACUC___GUGGUUUCACCGGCACAGCAGGGAUCACUGGGAUCUCACCCGUAGCUUUGUCCCGGAGCUUCAGGGCUAGCUCCC
.((((((((.......(((((((.(((((((................)))))))))))))).)))).))))...((((.((..(((..(((((((...)))))))...)))..)).)))) (-35.30 = -35.37 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:39 2006