Locus 8476

Sequence ID 3R_DroMel_CAF1
Location 22,616,020 – 22,616,121
Length 101
Max. P 0.976778
window13635

overview

Window 5

Location 22,616,020 – 22,616,121
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 95.74
Mean single sequence MFE -27.89
Consensus MFE -23.88
Energy contribution -24.08
Covariance contribution 0.20
Combinations/Pair 1.07
Mean z-score -1.97
Structure conservation index 0.86
SVM decision value 1.78
SVM RNA-class probability 0.976778
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22616020 101 - 27905053
CCAAAACGCCACAAACGCUCUAAACUGGAGUGAGUUAUGGCCCGAAAGGAUGAGCAAAAGUGGUGCAUCAACCCAUUUGCCAGCUGCACACACUAGCUAAU
.......((((.((.((((((.....))))))..)).))))((....))...(((...(((((((((.(.............).))))).)))).)))... ( -28.42)
>DroSec_CAF1 64296 101 - 1
CCAAAACGCCACAAACGCUCUAAACUGGAGUGAGUUAUGGCCCGAAAGGAUGGGCAAAAGUGGUGCAUCAACCCAUUUGCCAGCUGCACACACUAGCUAAU
.......((((.((.((((((.....))))))..)).))))((....))...((((((.(.(((......)))).))))))(((((.......)))))... ( -32.00)
>DroSim_CAF1 66107 101 - 1
CCAAAACGCCACAAACGCUCUAAACUGGAGUGAGUUAUGGCCCGAAAGGAUGGGCAAAAGUGGUGCAUCAACCCAUUUGCCAGCUGCACACACUAGCUAAU
.......((((.((.((((((.....))))))..)).))))((....))...((((((.(.(((......)))).))))))(((((.......)))))... ( -32.00)
>DroEre_CAF1 72411 100 - 1
CCAAAACGCCACAAACGCACUAAACGGCAGUGAGUUAUGGCCC-AAAGGAUGAGCAAGAGUGGUGCAUCAACCCAUUUGCCAGCUGCACACACUAGCUAAU
((.....((((..(((.((((.......)))).))).))))..-...))...(((...(((((((((.(.............).))))).)))).)))... ( -24.22)
>DroYak_CAF1 67184 101 - 1
CCAAAAUGCCACAAAUGCUCUAAACGGGAGUGAGUUAUGGGCCAAAAGGAUGAGCAAAAGUGGUGCAUCAACCCAUUUGCCAGCUGCACACACUAGCUAAU
((.....(((.((...((((...((....))))))..))))).....))...(((...(((((((((.(.............).))))).)))).)))... ( -22.82)
>consensus
CCAAAACGCCACAAACGCUCUAAACUGGAGUGAGUUAUGGCCCGAAAGGAUGAGCAAAAGUGGUGCAUCAACCCAUUUGCCAGCUGCACACACUAGCUAAU
.......((((.((.((((((.....))))))..)).))))((....))...(((...(((((((((.(.............).))))).)))).)))... (-23.88 = -24.08 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:14 2006