| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,606,452 – 22,606,565 |
| Length | 113 |
| Max. P | 0.722782 |
| Location | 22,606,452 – 22,606,565 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.73 |
| Mean single sequence MFE | -29.17 |
| Consensus MFE | -16.15 |
| Energy contribution | -16.77 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22606452 113 - 27905053 AACAUGUGUAGAAC--CAUAUCCAGCUGAGGGAGAGGGCUUAAGCUUCUUAUACCCUGGCAUUAAAUUUCAAUUUAAGCUGGACGCUUCGA----AGGCGAACAUCGGGGCAACUCCAC .....(((.((...--....(((((((.((((.((((((....)).))))...)))).....(((((....)))))))))))).(((((((----.(.....).)))))))..)).))) ( -31.90) >DroPse_CAF1 59889 97 - 1 AACAUGUGUACUGCCCCAUAUCCAGCGGA--------GCUUAAGCUUCUACUGCUCCGGCAUUAAAUUUCAAUUUAAGCUGGACGCUUCGA----AGGCGAAAGGCGGU---------- .........((((((.....(((((((((--------((.............)))))....((((((....))))))))))))((((....----.))))...))))))---------- ( -32.72) >DroWil_CAF1 130194 99 - 1 AACAUGUGUACAAC--CAAAUCCUGUGGA--------GCUUAAGCUUCUUAUGGUGUGGCAUUAAAUUUCAAUUUAAGCUGGACGUUUGGGGCUGAUGCCAAUGGCGAU---------- ..(((........(--(((((.....(((--------((....))))).....((.((((.((((((....)))))))))).))))))))(((....))).))).....---------- ( -24.60) >DroYak_CAF1 57193 102 - 1 AACAUGGGUACAAC--CAUAUCCAGCUGAGGGAGAGGGCUUAAGCUUCUUAUGCUCUGGCAUUAAAUUUCAAUUUAAGCUGGACGCUUCGA----AGGCGA-----------ACUCCGC ...((((......)--))).(((((((....((((..(((..(((.......)))..)))......))))......)))))))((((....----.)))).-----------....... ( -29.30) >DroAna_CAF1 55261 96 - 1 AACAUGUGUACAAC--CAUAUCCGGC------AGAGAGCUUAAGCUUCUUACGCUCCGGCAUUAAAUUUCAAUUUAAGCUGGACGCUUCCA----AGGCGAAAACCAG----------- .....(((((...(--(......)).------(((.(((....)))))))))))((((((.((((((....))))))))))))((((....----.))))........----------- ( -22.90) >DroPer_CAF1 64142 95 - 1 AACAUGUGUACUGC--CAUAUCCAGCGGA--------GCUUAAGCUUCUACUGCUCCGGCAUUAAAUUUCAAUUUAAGCUGGACGCUUCGA----AGGCGAAAGGCGGU---------- .........(((((--(...(((((((((--------((.............)))))....((((((....))))))))))))((((....----.))))...))))))---------- ( -33.62) >consensus AACAUGUGUACAAC__CAUAUCCAGCGGA________GCUUAAGCUUCUUAUGCUCCGGCAUUAAAUUUCAAUUUAAGCUGGACGCUUCGA____AGGCGAAAGGCGGU__________ ....................((((((...........(((..(((.......)))..))).((((((....))))))))))))(((((.......)))))................... (-16.15 = -16.77 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:12 2006