Locus 8473

Sequence ID 3R_DroMel_CAF1
Location 22,606,329 – 22,606,424
Length 95
Max. P 0.542463
window13632

overview

Window 2

Location 22,606,329 – 22,606,424
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 77.99
Mean single sequence MFE -26.30
Consensus MFE -16.69
Energy contribution -16.47
Covariance contribution -0.22
Combinations/Pair 1.23
Mean z-score -1.29
Structure conservation index 0.63
SVM decision value 0.02
SVM RNA-class probability 0.542463
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22606329 95 - 27905053
UGGGACUUUGGCAUGGUGCUUGGAAAGCGACGAAGUGCGAAUGCUUUGUGAAACAAUUAGCAUCUUGCUUAAUUGUUAGCAGAGCGCAAGAGCGG---
...(.((((.((...(..(((.(.......).)))..)....(((((((..((((((((((.....)).)))))))).))))))))).)))))..--- ( -29.30)
>DroPse_CAF1 59791 93 - 1
GUUCGGCUUGGCUUGGUGCUCUGGAAGCGACGAAGUGCGAAUGCUUUGUGAAACAAUUAGCAUCUUGCUUAAUUGUU--CAGAGAAGGAGAGCAG---
.....((((..(((....(((((((....(((((((......)))))))....((((((((.....)).))))))))--))))).))).))))..--- ( -27.20)
>DroYak_CAF1 57074 93 - 1
GGG--GUUUGCCAUGGUGCUUGGAAAGCGACGAAGUGCGAAUGCUUUGUGAAACAAUUAGCAUCUUGCUUAAUUGUUAGCAGAGCGCAAGAGCGG---
.(.--.(((((....(..(((.(.......).)))..)....(((((((..((((((((((.....)).)))))))).))))))))))))..)..--- ( -29.00)
>DroMoj_CAF1 66779 96 - 1
GGG--GAAUGCUCUAGUGCCUGAGAAGCGACGAAGUGCGAAUGCCUCCUAAAACAAUUAGCAUGCCGUCUAAUUGUUUGUAGACGGAAAGAGAAAGCA
(((--(..(((.((.((((.......)).))..)).)))....))))((((((((((((((.....).)))))))))).)))................ ( -19.30)
>DroAna_CAF1 55166 95 - 1
GGGGAAAAUGUCUAGGUGCUUGCAAAGCGACGAAGUGAAAAUGCUUUGUGAAACAAUUAGCAUCUUGCUUAAUUGUUGGCAGAGCGCAAAAGCGA---
........(((....((((((((......(((((((......)))))))..((((((((((.....)).)))))))).))).)))))....))).--- ( -25.80)
>DroPer_CAF1 64044 93 - 1
GUUCGGCUUGGCUUGGUGCUCUGGAAGCGACGAAGUGCGAAUGCUUUGUGAAACAAUUAGCAUCUUGCUUAAUUGUU--CAGAGAAGGAGAGCAG---
.....((((..(((....(((((((....(((((((......)))))))....((((((((.....)).))))))))--))))).))).))))..--- ( -27.20)
>consensus
GGG__GAUUGGCUUGGUGCUUGGAAAGCGACGAAGUGCGAAUGCUUUGUGAAACAAUUAGCAUCUUGCUUAAUUGUU_GCAGAGCGCAAGAGCAG___
................(((((........(((((((......)))))))..((((((((((.....)).))))))))............))))).... (-16.69 = -16.47 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:11 2006