Locus 8470

Sequence ID 3R_DroMel_CAF1
Location 22,594,876 – 22,594,976
Length 100
Max. P 0.828001
window13626

overview

Window 6

Location 22,594,876 – 22,594,976
Length 100
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 84.03
Mean single sequence MFE -20.98
Consensus MFE -13.99
Energy contribution -14.37
Covariance contribution 0.38
Combinations/Pair 1.09
Mean z-score -2.09
Structure conservation index 0.67
SVM decision value 0.70
SVM RNA-class probability 0.828001
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22594876 100 + 27905053
CGCUUACAUAAAGCUUACGUGUCCUUCUACUCAGCUCACUCUUACCA----CUUACCACUUUGUGUGGUGUUGCCUACUUUUGUGCGCAGCGCUGUCUCACUUC
.((((.....))))....(((..........((((............----...(((((.....)))))(((((.(((....))).)))))))))...)))... ( -24.12)
>DroSim_CAF1 44432 95 + 1
UGCUUACAUAAAGCUUACGUGUCCUUCUACUCAGCUCACUCUUACCA----CUUGCCACUC-----AGUGUUGCCUACUUUUGUGCGCAGCGCUGUCUCGCUUC
.((((.....))))....(((..((.......))..)))........----...((....(-----((((((((.(((....))).)))))))))....))... ( -22.60)
>DroEre_CAF1 47661 88 + 1
CGCUUACAUAAAGCUUACGUGUCCUCCUACUCAGCUCA-----------AUCUUGGCACUC-----GAGGUUGCCUACUUUUGUGCGCAGCGCUGUCUCACUUC
.((((.....))))....(((..........((((...-----------..((((.....)-----)))(((((.(((....))).)))))))))...)))... ( -19.32)
>DroYak_CAF1 45240 99 + 1
CGCUUACAUAAAGCUUACGUGUCUUUCCACACAGCUCACACUUACCACACUCUUGCCACUC-----GAUGUUGCCUACUUUUGUGCGCAGCGCUGUCUCACUUC
.((((.....))))....(((......)))(((((.................(((.....)-----)).(((((.(((....))).))))))))))........ ( -17.90)
>consensus
CGCUUACAUAAAGCUUACGUGUCCUUCUACUCAGCUCACUCUUACCA____CUUGCCACUC_____GAUGUUGCCUACUUUUGUGCGCAGCGCUGUCUCACUUC
.((((.....))))....(((..........((((......................(((......)))(((((.(((....))).)))))))))...)))... (-13.99 = -14.37 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:06 2006