Locus 847

Sequence ID 3R_DroMel_CAF1
Location 2,882,775 – 2,882,895
Length 120
Max. P 0.520944
window1348

overview

Window 8

Location 2,882,775 – 2,882,895
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.86
Mean single sequence MFE -38.60
Consensus MFE -29.65
Energy contribution -31.27
Covariance contribution 1.63
Combinations/Pair 1.13
Mean z-score -1.45
Structure conservation index 0.77
SVM decision value -0.02
SVM RNA-class probability 0.520944
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2882775 120 - 27905053
UAGGCUUCACCUCAGGAGCCUCUAAGCUAGGACUGGAUUCUUCGGCUUCUUCUUUUAGUUCCGUUUUACCCGUUUCCGACAGGGAUGCUGAGGAAACCUCUGGGGACACUGGAUCAUAAA
.(((((((......)))))))....(((((((..(((..(....)..)))..)))))))((((.....(((((((((..(((.....))).))))))....))).....))))....... ( -35.90)
>DroSec_CAF1 4464 120 - 1
UAGGCUUCACCUCUGGAGCCUCUAGGCUAGGACUGGAUUCCUCGGCUUCUUCUUUGAGUUCAGUUUUACCUGUUUCCGACAGGGAUACUGAGGAAACCUCCGGGGACACUGGAUCAUAAA
.((((((((....))))))))..(((.(((((((((((((...((......))..))))))))))))))))((((((..(((.....))).)))))).(((((.....)))))....... ( -42.40)
>DroSim_CAF1 3156 120 - 1
UGGGCUUCACCUCUGGAGCCUCUAGGCUAGGACUGGAUUCCUCGGCUUCUUCUUUGAGUUCCGUUUUACCUGUUUCCGACAGGGAUACUGAGGAAACCUCCGGAGACACUGGAUCAUAAA
..(((((((....)))))))(((((....(((..((.((((((((..((.....((((......))))((((((...))))))))..)))))))).)))))(....).)))))....... ( -41.00)
>DroEre_CAF1 4453 120 - 1
UGGGCUUCACCUCUGGAGCCUCUAGGCUUUGACUGGAUUCUUCGGCAUCUUCCUUAAGUUCCGCAUUGCCUGUUUCUGAAAGGGCUGGUGAGGAAAUCUCUGGAGACACUGGAUCAUAAA
..(((((((....)))))))(((((.......)))))...(((((..(((((......((((.((((((((..........)))).)))).))))......)))))..)))))....... ( -35.10)
>consensus
UAGGCUUCACCUCUGGAGCCUCUAGGCUAGGACUGGAUUCCUCGGCUUCUUCUUUGAGUUCCGUUUUACCUGUUUCCGACAGGGAUACUGAGGAAACCUCCGGAGACACUGGAUCAUAAA
..((((((......))))))(((((....(((..((.(((((((((.((.....((((......))))((((((...)))))))).))))))))).)))))(....).)))))....... (-29.65 = -31.27 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:38 2006