Locus 8465

Sequence ID 3R_DroMel_CAF1
Location 22,573,771 – 22,573,861
Length 90
Max. P 0.754313
window13620

overview

Window 0

Location 22,573,771 – 22,573,861
Length 90
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 81.03
Mean single sequence MFE -29.67
Consensus MFE -17.11
Energy contribution -17.17
Covariance contribution 0.06
Combinations/Pair 1.21
Mean z-score -2.27
Structure conservation index 0.58
SVM decision value 0.48
SVM RNA-class probability 0.754313
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22573771 90 + 27905053
AAACAUUUGCUCCGAGGAUGCUGAGAAAUCUCUCG-----GAUUUGCGCAUGCGCCGCGGAUG-----UGGACUUCUCUUAUACCAACAGAGAGAUUUCG
..(((((((((((((((((........))).))))-----))...(((....))).)))))))-----).((..((((((.........))))))..)). ( -31.50)
>DroSec_CAF1 22031 90 + 1
AAACAUUCGCUCCGAGGAUGCUGAGAUAUCUCUUG-----GAUUUGCGCAUGCGCCGCGGAUG-----UGGACUUCUCUUAUACCAAUAGAGAGAUUUCG
..((((((((((((((((((......)))).))))-----))...(((....))).)))))))-----).((..((((((.........))))))..)). ( -31.30)
>DroSim_CAF1 23694 90 + 1
AAACAUUCGCUCCGAGGAUGCUGAGAUAUCUCUUG-----GAUUUGCGCAUGCGCCGCGGAUG-----UGGACUUCUCUUAUACCAAUAGAGAGAUUUCG
..((((((((((((((((((......)))).))))-----))...(((....))).)))))))-----).((..((((((.........))))))..)). ( -31.30)
>DroEre_CAF1 26363 89 + 1
AAACAUCCGCUCUGAGGAUGCUGAGAAAUCUCUUG-----GAAUUGCGCAUGCGCCGCGGAUG-----UGAAGUUCUCUUAUACCAACAGAGAAAU-GCA
..((((((((((..(((((........))).))..-----))...(((....))).)))))))-----)(...((((((.........))))))..-.). ( -29.70)
>DroYak_CAF1 23307 88 + 1
AAACAUCCGCUUUAAAGAUGCUGA-AAAUCUCUGG-----GAAUUGCGCAUGCGCCGCGGAUG-----UGAACUUCUCUUAUACCAACAGAGAGAU-UCG
..((((((((((((.((((.....-..)))).)))-----)....(((....))).)))))))-----)(((.((((((.........)))))).)-)). ( -26.10)
>DroPer_CAF1 30703 95 + 1
AAACAUUCGCUG---GGGAGCGGAGCUCUUUCUUGUCAGAGAUCUGCGCAUGCGUCGCGGACAGAGAAUGGUAAUCUCUUAUACCAUCGGAGAGAA-CC-
...(((((.(((---((((((...))))))((((....))))(((((((....).))))))))).)))))....((((((.........)))))).-..- ( -28.10)
>consensus
AAACAUUCGCUCCGAGGAUGCUGAGAAAUCUCUUG_____GAUUUGCGCAUGCGCCGCGGAUG_____UGGACUUCUCUUAUACCAACAGAGAGAU_UCG
...(((((((............(((....))).............(((....))).)))))))...........((((((.........))))))..... (-17.11 = -17.17 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:00 2006