| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,557,870 – 22,557,965 |
| Length | 95 |
| Max. P | 0.690537 |
| Location | 22,557,870 – 22,557,965 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 77.25 |
| Mean single sequence MFE | -20.96 |
| Consensus MFE | -11.80 |
| Energy contribution | -11.97 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.690537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22557870 95 - 27905053 UUUUCCGUAUCUGCGUCCGUGUGAUUCGAUUGCUUUGCGAUUGGACACGCACAUAGAAAGGCUUUCUCUUUUCCC---------AUUCCUUAUGUGGCUAUCUC ......(((.(..(((..(((((.(((((((((...)))))))))))))).....((((((......))))))..---------.......)))..).)))... ( -22.50) >DroSec_CAF1 5992 95 - 1 UUUUCCGUAUCUGCGUCCGUGUGAUUCGAUUGCUUUGCGAUUGGACACGCACAUAGAAAGGCUUUCUCUUCUCCC---------AUUCCUUGUGUGGCAAUCUC ...........(((......(((.(((((((((...))))))))))))(((((..(((.((............))---------.)))..))))).)))..... ( -22.50) >DroSim_CAF1 7745 95 - 1 UUUUCCGUAUCUGCGUCCGUGUGAUUCGAUUGCUUUACGAUUGGACACGCACAUAGAAAGGCUUUCUUUUCUCCC---------AUUCCUUAUGUGGCUAUCUC ......(((.(..(((..(((((.((((((((.....)))))))))))))....(((((((....)))))))...---------.......)))..).)))... ( -21.00) >DroEre_CAF1 6065 95 - 1 UUUUCCGUAUCUCCCGCCGUGUGAUUCGAUUGCUUUGCGAUUGGACACGCACAUAGAAAGCCUUUCUCUUUCCCC---------UUUCCUUUUGUGGCUGCAUC ...............((((((((.(((((((((...))))))))))))))(((..(((((..............)---------))))....))))))...... ( -22.84) >DroWil_CAF1 31967 94 - 1 CAUUCUGUUACUCCAUCCAGGUCAUUCGAUAGGCUUCAGAAUGGACACUCACAUAUA-----UGUCUCUUUUGCCGCCU-----CUACCUUUCACAGUUUACCC ....((((............(((....)))((((..(((((.(((((..........-----))))).)))))..))))-----.........))))....... ( -15.70) >DroYak_CAF1 6184 100 - 1 UUUUUCGUAUCUC----CGUGUGAUUCGAUUGCUUUGCGAUUGGACACGCACAUAGAAAGCCUUUCUCUUUUCUCUUUUCCAACUUUCCUUAUGUGGCUAUCUC .............----.(((((.(((((((((...))))))))))))))....(((.((((.................................)))).))). ( -21.21) >consensus UUUUCCGUAUCUCCGUCCGUGUGAUUCGAUUGCUUUGCGAUUGGACACGCACAUAGAAAGGCUUUCUCUUUUCCC_________AUUCCUUAUGUGGCUAUCUC ....((((((........(((((.(((((((((...))))))))))))))....((((.....))))........................))))))....... (-11.80 = -11.97 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:50 2006