Locus 845

Sequence ID 3R_DroMel_CAF1
Location 2,881,799 – 2,881,919
Length 120
Max. P 0.568207
window1346

overview

Window 6

Location 2,881,799 – 2,881,919
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.44
Mean single sequence MFE -24.95
Consensus MFE -19.30
Energy contribution -19.67
Covariance contribution 0.38
Combinations/Pair 1.18
Mean z-score -1.49
Structure conservation index 0.77
SVM decision value 0.07
SVM RNA-class probability 0.568207
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2881799 120 + 27905053
CCAAAUGCCAGUUCCCUCCCUUCUGGUCAGGACUCAACUUCAACUAAGACCUCUAAGGUUAACUCUCAACUAGAGUUGCCAUUAAAAAUUGUGGCCAAGCAUGAAGCUCCGACUGAGUUU
......(((((((.(((.((....))..)))......(((((.....((((.....))))((((((.....))))))(((((........)))))......)))))....))))).)).. ( -26.70)
>DroSec_CAF1 3491 120 + 1
CCAAAUACCAGUACCCUCCCCUCUGGUCAGGACUCAACUUCAAAAAAGACCUCUAAGGUUAACUCUCAACUAGAGUUGCCAUUAAAAAUUGUGGCAAAGCAUGAAGCUCCAACUGAGUUU
......(((((...........)))))..(((((((.(((((.....((((.....))))((((((.....))))))(((((........)))))......))))).......))))))) ( -26.90)
>DroSim_CAF1 2183 120 + 1
CCAAAUACCAGUACCCUCUCUUCGGGUCGGGAUUCAACUUCAAAAAAAACCUCUAAGGUUAACACUCAACUAGAGUUGCCAUUAAAAAUUGUGGCCAAGCAUGAAGCUCCAACUGAGUUU
......((((((.(((..((....))..)))......(((((.....((((.....))))...((((.....)))).(((((........)))))......))))).....)))).)).. ( -26.60)
>DroEre_CAF1 3516 120 + 1
UCAAAUAAUAUUACCCUCUCUUCUUGUAAGGACUCUACUUCAACAAAUACCUCUAAGGUUGUCUCUCAACUGGAAUUGCCAUUAAAAAUUGUGGCCAAGCAUGAAGCUCCAACUGAGUUU
..............(((..(.....)..)))((((.....................(((((.....)))))(((...(((((........)))))...((.....)))))....)))).. ( -19.60)
>consensus
CCAAAUACCAGUACCCUCCCUUCUGGUCAGGACUCAACUUCAAAAAAGACCUCUAAGGUUAACUCUCAACUAGAGUUGCCAUUAAAAAUUGUGGCCAAGCAUGAAGCUCCAACUGAGUUU
........((((..(((..(.....)..)))......(((((.....((((.....))))((((((.....))))))(((((........)))))......))))).....))))..... (-19.30 = -19.67 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:36 2006