Locus 8445

Sequence ID 3R_DroMel_CAF1
Location 22,520,607 – 22,520,697
Length 90
Max. P 0.917286
window13593

overview

Window 3

Location 22,520,607 – 22,520,697
Length 90
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 77.67
Mean single sequence MFE -23.75
Consensus MFE -15.87
Energy contribution -15.90
Covariance contribution 0.03
Combinations/Pair 1.06
Mean z-score -1.81
Structure conservation index 0.67
SVM decision value 1.11
SVM RNA-class probability 0.917286
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22520607 90 + 27905053
ACAAUAUCCAUUUAUGCGCAUAAUGAGGAGUCAUACAUCAGGGAUGACC-------ACAGCUGCCGACGGCUGCUCAUCA---------UCCUCAGUCUCAUCCAA----------
......................(((((((........)).(((((((..-------.((((((....))))))....)))---------))))....)))))....---------- ( -20.50)
>DroPse_CAF1 179714 85 + 1
ACAAUACCCAUUUAUGCACAUAAUGAGGAGUCAUCCAUCAGGGAUGACUACGAGGUACAGCUGCCGACGGCUGCUCAUCA---------G------------GCAG----------
..............(((...(.(((((.((((((((.....))))))))........((((((....))))))))))).)---------.------------))).---------- ( -27.30)
>DroEre_CAF1 156380 90 + 1
ACAAUAUCCAUUUAUGCGCAUAAUGAGCAGUCAUACAUCAGGGAUGACU-------ACAGCUGCCGACGGCUGCUCAUCA---------UCCCCACUUUCAUCCAA----------
..............(((.(.....).)))...........(((((((..-------.((((((....))))))....)))---------)))).............---------- ( -21.20)
>DroYak_CAF1 154704 90 + 1
ACAAUAUCCAUUUAUGCGCAUAAUGAGUAGUCAUACAUCAGGGAUGGCU-------ACAGCUGCCGACGGCUGCUCAUCA---------UCCCCAGUCUCAUCCAA----------
.......................((((((....))).)))(((((((..-------.((((((....))))))....)))---------)))).............---------- ( -20.30)
>DroAna_CAF1 164621 109 + 1
ACAAUACCCAUUUAUGCGCAUAAUGAGGAGUCAUACAUCAGGGAUGACU-------ACAGCUGCCGACGGCUGCUCAUCAGCAUCCGUAUCCGCAUCCUCAUCCAUACCACCGCCC
...............(((....((((((((((((.(.....).))))).-------.....(((..((((.((((....)))).))))....)))))))))).........))).. ( -25.92)
>DroPer_CAF1 180385 85 + 1
ACAAUACCCAUUUAUGCACAUAAUGAGGAGUCAUCCAUCAGGGAUGACUACGAGGUACAGCUGCCGACGGCUGCUCAUCA---------G------------GCAG----------
..............(((...(.(((((.((((((((.....))))))))........((((((....))))))))))).)---------.------------))).---------- ( -27.30)
>consensus
ACAAUACCCAUUUAUGCGCAUAAUGAGGAGUCAUACAUCAGGGAUGACU_______ACAGCUGCCGACGGCUGCUCAUCA_________UCC_CA_UCUCAUCCAA__________
......................(((((.((((((.(.....).))))))........((((((....)))))))))))...................................... (-15.87 = -15.90 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:35 2006