Locus 844

Sequence ID 3R_DroMel_CAF1
Location 2,880,682 – 2,880,794
Length 112
Max. P 0.669473
window1345

overview

Window 5

Location 2,880,682 – 2,880,794
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.07
Mean single sequence MFE -41.08
Consensus MFE -36.24
Energy contribution -35.04
Covariance contribution -1.20
Combinations/Pair 1.24
Mean z-score -1.46
Structure conservation index 0.88
SVM decision value 0.29
SVM RNA-class probability 0.669473
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2880682 112 - 27905053
--------ACCCUGAGGAACCAACGUUAUCUGAGCUGCAGACAAUGGUUUGCGGAUUAGGAGGCUUAACUUCCGUAGGCGAAGGCUGGGAGCGGUUUGGCUGAUCCUGGAGGGGCAGAAU
--------.((((.((((..........(((((.((((((((....)))))))).))))).((((.(((((((...(((....))).)))..)))).))))..)))).).)))....... ( -40.40)
>DroSec_CAF1 2362 112 - 1
--------ACCCUGAGGAACCUAUGUUAUCUGAGCUGCAGACAAUGGUUUGCGGAUUUGGAGGCUUGACUUCCGUAGGCGAAGGCUGGGAGCGGUUCGGUUGAUCCUGGAGGGGCAGAAU
--------.((((.(((((((.......((..((((((((((....)))))))).))..))(..(((.(((((...(((....)))))))))))..))))...)))).).)))....... ( -39.60)
>DroSim_CAF1 1099 112 - 1
--------ACCCUGAGGAACCUAUGUUAUCUGAGCUGCAGACAAUGGUUUGCGGAUUUGGAGGCUUGACUUCCGUAGGCGAAGGCUGGGAGCGGUUUGGUUGAUCCUGGAGGGGCAGAAU
--------.((((.((((......(((.((..((((((((((....)))))))).))..)))))(..(((.((((.(((....)))....))))...)))..))))).).)))....... ( -40.00)
>DroEre_CAF1 2380 120 - 1
AUUUGAAGACCCCGAGGGACCUUUGUUGUCUGAGCUGCAGACAAUUGUUUGUGGAUUUGGGGGCUUGACUUCCGUGGGCGAUGGCUGGGAGCGAUUUGGCUGAUCCUGGAGGGGCAGGAU
.......(.((((..((((((((..((((((...(..(((((....)))))..)....(((((.....)))))..))))))..)..)))(((......)))..))))...)))))..... ( -39.40)
>DroYak_CAF1 1135 120 - 1
AUUUGAAGACCCCGAGGAACCUCUGUUAUCUGACCUGCAGACAAUAGUUUGUGGGUUUGGGGGCUUGACUUCUGUAGGCGCAGGCUGGGAGCGGUUUGGCUGAUCUUGGAGGGGCAGGAU
.........(((((((....)))........((((..(((((....)))))..)))).)))).((((.((((((..(((.(((((((....)))))))))).....))))))..)))).. ( -46.00)
>consensus
________ACCCUGAGGAACCUAUGUUAUCUGAGCUGCAGACAAUGGUUUGCGGAUUUGGAGGCUUGACUUCCGUAGGCGAAGGCUGGGAGCGGUUUGGCUGAUCCUGGAGGGGCAGAAU
.........((((.((((..........((..((((((((((....)))))))).))..))((((.(((((((...(((....))).)))..)))).))))..)))).).)))....... (-36.24 = -35.04 +  -1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:35 2006