Locus 8428

Sequence ID 3R_DroMel_CAF1
Location 22,465,189 – 22,465,279
Length 90
Max. P 0.717758
window13570

overview

Window 0

Location 22,465,189 – 22,465,279
Length 90
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 82.57
Mean single sequence MFE -34.04
Consensus MFE -18.30
Energy contribution -19.10
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.31
Structure conservation index 0.54
SVM decision value 0.39
SVM RNA-class probability 0.717758
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22465189 90 - 27905053
AUAAUAUCUGGUGG-------CUGGCGGUCACUGCUCACUGG--AUGGGAUGCCAGUUGCCAGUUGCCAGUUACCAGUCGGCAGUUGGUGCUCCGGGUU
.......(((((((-------((((((...((((...(((((--........)))))...)))))))))))))))))((((.(((....)))))))... ( -37.70)
>DroSec_CAF1 98485 76 - 1
AUAAUAUCUGGCGG-------CUGGCGGUCACUGCUCACUGG--AUGGGAUGCCAGUUGCC--------------AGUUGGCAGUUGGUGCUCCGGGUU
.....((((((...-------..((((.(.((((((.(((((--.(((....)))....))--------------))).)))))).).)))))))))). ( -29.90)
>DroSim_CAF1 95401 83 - 1
AUAAUAUCUGGCGG-------CUGGCGGUCACUGCUCACUGG--AUGGGAUGCCAGUUGCC-------AGUUACCAGUUGGCAGUUGGUGCUCCGGGUU
.......(((((((-------((((((.((.(((.((....)--)))))))))))))))))-------))..(((....((((.....))))...))). ( -30.60)
>DroEre_CAF1 99399 92 - 1
AUAAUAUCUGGCGGAUGGCGGAUGGCGGUCACUGGUCACUGGUCACUGGAUGCCAGUUGCC-------AGUUUCCAGUUGGCAGUUGGUGCUCCGGGUU
.....((((((.....((((..((((.((((((((..((((((.(((((...))))).)))-------)))..)))).)))).)))).)))))))))). ( -37.30)
>DroYak_CAF1 98123 78 - 1
AUAAUAUCUGGCGA-------CUGGCGGUCACUGCUCACUGGUCACUGGAUGCCAGUUA--------------CCAGUUGGCUGUUGGUGCUCCGGGUU
.....((((((.((-------(..(((((((......((((((.(((((...))))).)--------------))))))))))))..)).).)))))). ( -34.70)
>consensus
AUAAUAUCUGGCGG_______CUGGCGGUCACUGCUCACUGG__AUGGGAUGCCAGUUGCC_______AGUU_CCAGUUGGCAGUUGGUGCUCCGGGUU
.....((((((............((((.(.((((((.(((((...............................))))).)))))).).)))))))))). (-18.30 = -19.10 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:14 2006