| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 517,910 – 518,004 |
| Length | 94 |
| Max. P | 0.532833 |
| Location | 517,910 – 518,004 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 81.93 |
| Mean single sequence MFE | -25.42 |
| Consensus MFE | -15.39 |
| Energy contribution | -16.97 |
| Covariance contribution | 1.58 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532833 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 517910 94 + 27905053 GAGCGAAAGUGCAUGUCUGACUUAUCGAUACUAAAAUUUUAAUGAACUUAUAAGUUUGCGUGUCGAAUUGUCAAACAGUUCGCGCUGGGCGUGC-------- ..((....))(((((((((((...(((((((..((((((............))))))..)))))))...))))..((((....)))))))))))-------- ( -28.20) >DroSec_CAF1 44484 94 + 1 GAGCGAAAGUGCAUGUCUGACUUAUCGAUACUAAAAUUUUAAUGAACUUAUAAUUUUGCAUGUCGAAUUGUCAAACAGUUCGCGCUGGGCGUGC-------- ..((....))(((((((((((...((((((.(((((((.(((.....))).)))))))..))))))...))))..((((....)))))))))))-------- ( -26.60) >DroSim_CAF1 44595 94 + 1 CAGCGAAAGUGCAUGUCUGACUUAUCGAUACUAAAAUUUUAAUGAACUUAUAAUUUUGCGUGUCGAAUUGUCAAACAGUUCGCGCUGGGCGUGC-------- ..((....))(((((((((((...((((((((((((((.(((.....))).))))))).)))))))...))))..((((....)))))))))))-------- ( -30.80) >DroEre_CAF1 50178 94 + 1 GAGCGAAAGUGCAUUGCUGACUAAUCGAUAUUAAAAUGUUAAUGAACUGAACUUUUUGCGUGUCGAAUUGUCAAACAGUUCGCGCUGGGCGUGC-------- ..(((..(((((((((.((((...((((((((((((.(((.........))).))))).)))))))...))))..))))..)))))...)))..-------- ( -24.00) >DroYak_CAF1 62383 78 + 1 ----------------CUGACUUAUCGAUAUAAAAAUGUUAAUGACCUGAACAUUUUGCGUGUCGAAUUGUCACACAGUUCGCGCUGGGAGUGC-------- ----------------.((((...(((((((.((((((((.........))))))))..)))))))...))))........((((.....))))-------- ( -20.60) >DroAna_CAF1 61417 102 + 1 GAGCGAAAGUGCAUUUGGGUCUUAUCGAUAUUGAAAUGUUAAUGAACUGAAAAUUUUGCGUGUCGAAUUGUCGAACAGUUCGCGCUGGGUAUAUGGGUAUAU ..((((((.....(((.(((.((((..((((....))))..))))))).))).))))))(((.(((((((.....))))))))))................. ( -22.30) >consensus GAGCGAAAGUGCAUGUCUGACUUAUCGAUACUAAAAUGUUAAUGAACUGAAAAUUUUGCGUGUCGAAUUGUCAAACAGUUCGCGCUGGGCGUGC________ ..(((..(((((..............((((((((((((.............))))))).)))))((((((.....)))))))))))...))).......... (-15.39 = -16.97 + 1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:38 2006