| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,365,199 – 22,365,294 |
| Length | 95 |
| Max. P | 0.879559 |
| Location | 22,365,199 – 22,365,294 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 80.43 |
| Mean single sequence MFE | -26.64 |
| Consensus MFE | -15.89 |
| Energy contribution | -16.45 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.879559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22365199 95 - 27905053 UGGAAGAGCGCUCUGCAUUUGCAUUAGAAGUUCAUUAGUGAGU--GCGGUUGAUGCAAAUGCUGGGGAUAAAUCAGUGGGAAAACUCCAAGAAGACC ((((.((...(((((((((((((((((..(((((....)))..--))..))))))))))))).)))).....)).((......))))))........ ( -27.70) >DroPse_CAF1 17179 80 - 1 UGGCAGA----CAUGAAUUUGCAUUAGAAGUUCAUUAGUGAAA--G--GAGGAGGAAAACUCUAGG---AAAACUCUAGGAAAACUCUAAU------ ..(((((----......)))))((((((..(((.((((.....--.--..((((.....))))...---......)))))))...))))))------ ( -14.23) >DroSec_CAF1 6391 94 - 1 GGGAAGAGCGCUCUGCAUUUGCAUUAGAAGUUCAUUAGUGAGU--GCGGUUGAUGCAAAUGCUAGAGGGAAAUCAGUGGGA-AACUCCAAGAAGGCC .(((.((.(.(((((((((((((((((..(((((....)))..--))..))))))))))))).)))).)...))....(..-..))))......... ( -32.30) >DroSim_CAF1 1857 95 - 1 UGGAAGAGCGCUCUGCAUUUGCAUUAGAAGUUCAUUAGUGAGU--GCGGUUGAUGCAAAUGCUAGGGGGAAAUCAGUGGGAAAACUCCAAGAAGGCC ((((.((.(.(((((((((((((((((..(((((....)))..--))..))))))))))))).)))).)...)).((......))))))........ ( -30.70) >DroEre_CAF1 1926 94 - 1 UGGAAGAGCGGUCUGCAUUUGCAUUAGAAGUUCAUUAGUGAGU--GCGGCUGAUGCAAAUGCUGG-GGUAAAUCAGUAGGGAAACUGCAAGAAGGCC .........((((((((((((((((((..(((((....)))..--))..)))))))))))))...-.........((((.....))))....))))) ( -31.30) >DroYak_CAF1 1980 89 - 1 UGGAAGAGCGGUCUGCAUUUGCAUUAGAAGUUCAUUAGUGAGUUUGCGGCUGAUGCAAAUG--------AAAUCAGUAGGGAAGCUUCAAGAAGGCC .........(((((.((((((((((((..((..(((....)))..))..))))))))))))--------......(.(((....))))....))))) ( -23.60) >consensus UGGAAGAGCGCUCUGCAUUUGCAUUAGAAGUUCAUUAGUGAGU__GCGGUUGAUGCAAAUGCUAGGGG_AAAUCAGUAGGAAAACUCCAAGAAGGCC .......((..((((((((((((((((..(((((....)))....))..)))))))))))))................(((....))).)))..)). (-15.89 = -16.45 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:34 2006