Locus 8392

Sequence ID 3R_DroMel_CAF1
Location 22,360,671 – 22,360,764
Length 93
Max. P 0.949895
window13517 window13518

overview

Window 7

Location 22,360,671 – 22,360,764
Length 93
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 97.85
Mean single sequence MFE -16.78
Consensus MFE -15.57
Energy contribution -15.20
Covariance contribution -0.37
Combinations/Pair 1.10
Mean z-score -1.85
Structure conservation index 0.93
SVM decision value 0.35
SVM RNA-class probability 0.698945
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22360671 93 + 27905053
CUACCUUUGUUGUCUUUUUUGCAUUUCCGCUUUACGUUUGUGUUUCGCUCGCACUCACGCACUCAAACACACGCAAACACAGACGCACACAUA
.......((((((((..(((((.....((.....))..(((((((.....((......))....))))))).)))))...))))).))).... ( -16.40)
>DroSim_CAF1 72366 93 + 1
CUACCUUUGUUGUCUUUUUUGCAUUUCCGCUUUACGUUUGUGUUUCGCUCGCACUCACGCACUCAAACACACGCAAACACAGACGCACACAUA
.......((((((((..(((((.....((.....))..(((((((.....((......))....))))))).)))))...))))).))).... ( -16.40)
>DroEre_CAF1 70857 93 + 1
CUACCUUUGUUGUCUUUUUUGCAUUUCCGCUUUACGUUUGUGUUUCGCUCGCACUCACGCACUCAAGCACACGCAAGCACAGACGCACACAUA
.......((((((((.....((......)).....((((((((...(((.((......)).....)))..))))))))..))))).))).... ( -17.60)
>DroYak_CAF1 70431 93 + 1
CUACCUUUGUUGUCUUUUUUGCAUUUCCGCUUUACGUUUGUGUUUCGCUCGCACUCACGCACUCAAACACACACAAACACAGACGCACAAAUA
.....((((((((((.....((......)).....((((((((.......((......))..........))))))))..))))).))))).. ( -16.73)
>consensus
CUACCUUUGUUGUCUUUUUUGCAUUUCCGCUUUACGUUUGUGUUUCGCUCGCACUCACGCACUCAAACACACGCAAACACAGACGCACACAUA
.......((((((((.....((......)).....((.(((((((.....((......))....))))))).))......))))).))).... (-15.57 = -15.20 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 22,360,671 – 22,360,764
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 97.85
Mean single sequence MFE -27.32
Consensus MFE -25.41
Energy contribution -25.72
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -2.95
Structure conservation index 0.93
SVM decision value 1.40
SVM RNA-class probability 0.949895
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22360671 93 - 27905053
UAUGUGUGCGUCUGUGUUUGCGUGUGUUUGAGUGCGUGAGUGCGAGCGAAACACAAACGUAAAGCGGAAAUGCAAAAAAGACAACAAAGGUAG
....(((..((((...((((((((((((((.(..(....)..)...).))))))...((.....))...)))))))..)))).)))....... ( -27.70)
>DroSim_CAF1 72366 93 - 1
UAUGUGUGCGUCUGUGUUUGCGUGUGUUUGAGUGCGUGAGUGCGAGCGAAACACAAACGUAAAGCGGAAAUGCAAAAAAGACAACAAAGGUAG
....(((..((((...((((((((((((((.(..(....)..)...).))))))...((.....))...)))))))..)))).)))....... ( -27.70)
>DroEre_CAF1 70857 93 - 1
UAUGUGUGCGUCUGUGCUUGCGUGUGCUUGAGUGCGUGAGUGCGAGCGAAACACAAACGUAAAGCGGAAAUGCAAAAAAGACAACAAAGGUAG
..(((((.((..((..((..((..(......)..))..))..))..))..)))))........(((....))).................... ( -25.90)
>DroYak_CAF1 70431 93 - 1
UAUUUGUGCGUCUGUGUUUGUGUGUGUUUGAGUGCGUGAGUGCGAGCGAAACACAAACGUAAAGCGGAAAUGCAAAAAAGACAACAAAGGUAG
..(((((..((((..((((((((.((((((...((....)).))))))..)))))))).....(((....))).....)))).)))))..... ( -28.00)
>consensus
UAUGUGUGCGUCUGUGUUUGCGUGUGUUUGAGUGCGUGAGUGCGAGCGAAACACAAACGUAAAGCGGAAAUGCAAAAAAGACAACAAAGGUAG
....(((..((((...((((((((((((((.(..(....)..)...).))))))...((.....))...)))))))..)))).)))....... (-25.41 = -25.72 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:25 2006