Locus 8389

Sequence ID 3R_DroMel_CAF1
Location 22,358,962 – 22,359,062
Length 100
Max. P 0.922372
window13513

overview

Window 3

Location 22,358,962 – 22,359,062
Length 100
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.19
Mean single sequence MFE -26.38
Consensus MFE -18.12
Energy contribution -19.12
Covariance contribution 1.00
Combinations/Pair 1.09
Mean z-score -2.10
Structure conservation index 0.69
SVM decision value 1.15
SVM RNA-class probability 0.922372
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22358962 100 + 27905053
UGUACUGGCUUUUUGUGUGUGCUCGGAUUUAAGCUGCGAUAAAUUCGCAGAUU--CUACGGC----U-------------CAGAUUCUUC-AUCUGCCAUUACGCACGCAUCUCCAUAAU
.....(((.....((((((((...(((......((((((.....))))))..)--))..(((----.-------------.((((.....-)))))))....))))))))...))).... ( -28.00)
>DroSim_CAF1 70664 100 + 1
UGUACUGGCUUUUUGUGUGUGCUCGGAUUUAAGCUGCGAUAAAUUCGAAGAUU--CUACGGC----U-------------CAGAUUCUUC-AUCUGCCAUUACGCACGCAUCUCCAUAAU
.....(((.....((((((((.(((((((((........))))))))).....--....(((----.-------------.((((.....-)))))))....))))))))...))).... ( -25.20)
>DroEre_CAF1 69159 100 + 1
UGUACUGGCUUUUUGUGUGUGCUCAGACUUAAGCUGCGAUAAAUUCGCAGAUU--CUACGGC----U-------------CAGAUUCUUC-AUCUGCCAUUACGCACGCAUCUCCAUAAU
.....(((.....((((((((............((((((.....))))))...--....(((----.-------------.((((.....-)))))))....))))))))...))).... ( -27.50)
>DroWil_CAF1 74759 118 + 1
UCCGCUGUCCUUUUGU-UGUGGCCCUCUUGUAGCUGCGAUAAAU-CUCAGACUUUCUUUCGUUAGGUCAUCUAUUUCUGGCAGUUUCAACAAACUUCCAUUACACACGCAUCAUCAUCAU
...(((((...(((((-((..((.........))..))))))).-....(((((.........))))).........(((.(((((....))))).)))....))).))........... ( -21.20)
>DroYak_CAF1 68664 100 + 1
UGUACUGGCUUUUUGUGUGUGCUUGGAUUUAAGCUGCGAUAAAUUCGCAGAUU--CUACGGC----U-------------CAGAUUCUUC-AGCUGCCAUUACGCACGCAUCUCCAUAAU
.....(((.....((((((((..(((.......((((((.....))))))...--...((((----(-------------..((....))-))))))))...))))))))...))).... ( -30.00)
>consensus
UGUACUGGCUUUUUGUGUGUGCUCGGAUUUAAGCUGCGAUAAAUUCGCAGAUU__CUACGGC____U_____________CAGAUUCUUC_AUCUGCCAUUACGCACGCAUCUCCAUAAU
.....(((.....((((((((............((((((.....))))))..............................(((((......)))))......))))))))...))).... (-18.12 = -19.12 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:20 2006