| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,280,951 – 22,281,090 |
| Length | 139 |
| Max. P | 0.690502 |
| Location | 22,280,951 – 22,281,050 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 92.59 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -18.50 |
| Energy contribution | -18.17 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.690502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22280951 99 - 27905053 UAAAUAGAUGUUUCUAGCUUAGAAUAGCAGCCCCAUUUCGUUUAUUGACUUCAUUUAUUAUGCUAUAUCUAAGCAGUCAAAACCUAAGGAACUUGGCCA ....((((....))))(((((((((((((..........(((....)))...........)))))).))))))).(((((..((...))...))))).. ( -21.00) >DroSec_CAF1 2495 99 - 1 UAAAUGAAUGUUUUUAGCUUAGAAUAGCAGCACAAUUUCGUUUAUUGCCUUAAUUUAAUAUGCUAUAUCUAAGCAGUCAAAACUUAAGGAACUUGGCCA ................(((((((((((((....((((..((.....))...)))).....)))))).))))))).(((((............))))).. ( -18.10) >DroSim_CAF1 9642 99 - 1 UAAAUAGAUGUUUCUAGCUUAGAAUAGCAGACCCAUUUCGUUUAUUGACUUAAUUAAAUAUGCUAUAUCUAAGCAGUCAAAACUUAAGGAACUUGGCCA .........((((((.(((((((((((((.....(((..(((....)))..)))......)))))).)))))))(((....)))..))))))....... ( -21.20) >consensus UAAAUAGAUGUUUCUAGCUUAGAAUAGCAGCCCCAUUUCGUUUAUUGACUUAAUUUAAUAUGCUAUAUCUAAGCAGUCAAAACUUAAGGAACUUGGCCA ....((((....))))(((((((((((((..........(((....)))...........)))))).))))))).(((((............))))).. (-18.50 = -18.17 + -0.33)
| Location | 22,280,970 – 22,281,090 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.76 |
| Mean single sequence MFE | -21.44 |
| Consensus MFE | -0.80 |
| Energy contribution | -4.48 |
| Covariance contribution | 3.68 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.04 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604119 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22280970 120 + 27905053 UUGACUGCUUAGAUAUAGCAUAAUAAAUGAAGUCAAUAAACGAAAUGGGGCUGCUAUUCUAAGCUAGAAACAUCUAUUUAUUCCAAUCGUAGCAUUGAACAAAAUCUACUUUGAGAACAC ....(((((((((.((((((...(..((...((......))...))..)..))))))))))))).)).............((((((..((((.(((......))))))).))).)))... ( -21.40) >DroSec_CAF1 2514 120 + 1 UUGACUGCUUAGAUAUAGCAUAUUAAAUUAAGGCAAUAAACGAAAUUGUGCUGCUAUUCUAAGCUAAAAACAUUCAUUUAUUCCAAUCAUAGAAAUGGACAAAAUCUACUUUGAGAACAC ......(((((((.((((((.....((((..(........)..))))....)))))))))))))........(((......((((..........))))((((......)))).)))... ( -19.30) >DroSim_CAF1 9661 120 + 1 UUGACUGCUUAGAUAUAGCAUAUUUAAUUAAGUCAAUAAACGAAAUGGGUCUGCUAUUCUAAGCUAGAAACAUCUAUUUAUUCCAAUCAUAGCAAUGGACAAAAUCUACUUUGAGAACAC ....(((((((((.((((((.(((((.....((......))....))))).))))))))))))).)).....(((......((((..........))))((((......))))))).... ( -21.00) >DroEre_CAF1 9706 106 + 1 -----------GGUAUUGCAUAUUUAUUUAAGUUAGUACACAAAAUUUGGCUGCCAUAGUAAGCCAGAAAUAAAUAUUUACUCCAAUUGGAGCAAUAGACAAAUUCUACUGCCCAUU--- -----------((...((.((((((((((..((....)).......((((((((....)).)))))))))))))))).))..))...(((.(((.((((.....)))).))))))..--- ( -23.30) >DroYak_CAF1 9782 105 + 1 UUGACUGCUACGGGUUUGCAUAUGUAUUUAAGUUAGUACUUAAAAUGGU------------ACUUAGAAAUAAUUAUAUAUUCCAAAUAUAGCAAUAGUCAAAAUCUACUUUCAAAA--- ((((((((((...(((((.(((((((.(((..((((((((......)))------------)))..))..))).)))))))..))))).))))...))))))...............--- ( -22.20) >consensus UUGACUGCUUAGAUAUAGCAUAUUUAAUUAAGUCAAUAAACGAAAUGGGGCUGCUAUUCUAAGCUAGAAACAUCUAUUUAUUCCAAUCAUAGCAAUGGACAAAAUCUACUUUGAGAACAC ......(((((((.((((((...............................)))))))))))))........................................................ ( -0.80 = -4.48 + 3.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:24 2006