| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,254,687 – 22,254,784 |
| Length | 97 |
| Max. P | 0.581529 |
| Location | 22,254,687 – 22,254,784 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 90.00 |
| Mean single sequence MFE | -29.85 |
| Consensus MFE | -25.83 |
| Energy contribution | -26.08 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22254687 97 - 27905053 CGGAGGCAGUGGCUUAAAGGCGACAACUUGUGUGUCAAACGCGCAGAGGCAACGCG---ACCAGCGACUAACAACUUACUUAAGCCAUCUGCAG------GAGAAA .....((((((((((((..........(((((((.....)))))))......(((.---....))).............)))))))).))))..------...... ( -28.70) >DroSec_CAF1 27326 97 - 1 CGGAUGCAGUGGCUUAAAGGCGACACCUUGUGUGUCAAACGCGCAGAGGCAACGCG---AGCAGCGACUAACAACUUACUUAAGCCAACUGCAG------GAGAAA ....(((((((((((((....(((((.....)))))...(((((.(.(....).).---.)).))).............))))))).)))))).------...... ( -32.40) >DroSim_CAF1 27467 97 - 1 CGGAGGCAGUGGCUUAAAGGCGACAACUUGUGUGUCAAACGCGCAGAGGCAACGCG---AGCAGCGACUAACAACUUACUUAAGCCAACUGCAG------GAGAAA .....((((((((((((....((((.(....)))))...(((((.(.(....).).---.)).))).............))))))).)))))..------...... ( -28.80) >DroEre_CAF1 36456 97 - 1 CGGAGGCAGUGGCUUAAAGGCGACAACUUGUGUGUCAAACGCGCAAAGGCAACGCG---ACCAGCGACUAACAACUUACUUAAGCCAACUGCAG------GAGCAA .....((((((((((((..........(((((((.....)))))))......(((.---....))).............))))))).)))))..------...... ( -29.00) >DroYak_CAF1 32449 100 - 1 CGGAGGCAGUGGCUUAAAGGCGACAACUUGUGUGUGAAACGCGCAAAGGCAACGCGGCGAGCAGCGACUAACAACUUACUUAAGCCAACUGCAG------GAGCAA .....((((((((((((..(((....((((((((.....))))).)))....))).((.....))..............))))))).)))))..------...... ( -30.90) >DroAna_CAF1 29376 103 - 1 CAGGCGCUGUGGCUUAAAGGCGACAACUUGUGUGUCAAGCGCGCUAAGGCAACGCG---GCCAACAACUAACAACUUACUUAAGCCAACUGCCGCAGAUGGGGAAG ..((((...((((((((.((((....((((.....))))..))))..(((......---))).................))))))))..))))............. ( -29.30) >consensus CGGAGGCAGUGGCUUAAAGGCGACAACUUGUGUGUCAAACGCGCAAAGGCAACGCG___ACCAGCGACUAACAACUUACUUAAGCCAACUGCAG______GAGAAA .....((((((((((((.........((((((((.....))))).)))....(((........))).............)))))))).)))).............. (-25.83 = -26.08 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:12 2006