Locus 833

Sequence ID 3R_DroMel_CAF1
Location 2,868,421 – 2,868,541
Length 120
Max. P 0.777280
window1320

overview

Window 0

Location 2,868,421 – 2,868,541
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.73
Mean single sequence MFE -25.03
Consensus MFE -23.94
Energy contribution -23.72
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.42
Structure conservation index 0.96
SVM decision value 0.55
SVM RNA-class probability 0.777280
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2868421 120 - 27905053
UCCAGCAACACCACUCUGUUCGGGAAUCCUCUUUUUUUUUUUGCCGCAAAGUUCCAUUGACCAUCGAAGCCAAAAUACUUGGCAUCGCAAUGAAUCGUGUCUGGCAUUAAUCCCUGCCAC
....((((((......)))).((((............((..(((((((..((((.((((.....(((.(((((.....))))).)))))))))))..)))..))))..)))))).))... ( -26.30)
>DroEre_CAF1 277 109 - 1
------CA-UCCACUCGAUUUGGGAGUCCUCUUU----UUUUGCCGCAAAGUUCCAUUGACCAUUGAAGCCAAAAUACUUGGCAUCGCAAUGAAUCGUGUCUGGCAUUAAUCCCUGCCAC
------..-............((((........(----(..(((((((..((((.((((.....(((.(((((.....))))).)))))))))))..)))..))))..))))))...... ( -23.50)
>DroYak_CAF1 216 115 - 1
UCCAACCA-UUCACUCAAUUCGGGAAUCCUCUUU----UUUUGCCGCAAAGUUCCAUUGACCAUCGAAGCCAAAAUACUUGGCAUCGCAAUGAAUCGUGUCUGGCAUUAAUCCCUGCCAC
........-............((((........(----(..(((((((..((((.((((.....(((.(((((.....))))).)))))))))))..)))..))))..))))))...... ( -25.30)
>consensus
UCCA_CCA_UCCACUCAAUUCGGGAAUCCUCUUU____UUUUGCCGCAAAGUUCCAUUGACCAUCGAAGCCAAAAUACUUGGCAUCGCAAUGAAUCGUGUCUGGCAUUAAUCCCUGCCAC
.....................((((................(((((((..((((.((((.....(((.(((((.....))))).)))))))))))..)))..))))....))))...... (-23.94 = -23.72 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:11 2006