a score=0
s 3R_DroMel_CAF1 22227083 113 + 27905053 UACCAUACAUACAUAUGUA-UGUAUGUAAGUGUGAAAUGGUUGCAGUUGUCGCCAAGAGGCGUUUGCUGACUGGGCAAAUUGUGAGUUUCAUUGAUUUUCAGUUUCACACUUGG
s DroSim_CAF1 61411 109 + 1 AACCAUA----CAUUUGUA-UGUAUAUAAGUGUGAAAUGGUUGCAGUUGUCGCCAAGAGGCGUUUGCUGACUGGGCAAAUUGUGAGUUUCAUUGAUUUUCAGUUUCACACUUGG
s DroAna_CAF1 95345 106 + 1 AACAGUA----UAUACGGAGUCCAUGUAUAUGUAAAGU----GAAGUUGUCGCCAACAGGGGUUUGCUGAGUGUGCAAAUUGUAAGUUUCAUUGAUUUUCAGUUUCACACUUGG