Locus 832

Sequence ID 3R_DroMel_CAF1
Location 2,862,013 – 2,862,103
Length 90
Max. P 0.679320
window1319

overview

Window 9

Location 2,862,013 – 2,862,103
Length 90
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 73.01
Mean single sequence MFE -25.03
Consensus MFE -14.64
Energy contribution -15.58
Covariance contribution 0.95
Combinations/Pair 1.31
Mean z-score -1.42
Structure conservation index 0.58
SVM decision value 0.30
SVM RNA-class probability 0.679320
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2862013 90 + 27905053
UAGGGCAAAGUAUCCCACGGAUCCCA------CAGUCUCCACCGCCGACGGCAACUUC--CCUGGUUCUCAAAUCCGUCGGCAGUUGUCACGUAAUAA
...(((((..........(((..(..------..)..)))...((((((((.((((..--...)))).......))))))))..)))))......... ( -22.90)
>DroSec_CAF1 137009 89 + 1
UAGGGCAAAGUAUCCCACAGAUG-CA------CAGUCUCCACAGCCGACGGCAACUUC--CCUGGUUCUCAAAUCCGUCGGCAAUUGUCACGUAAUAA
...(((((.(((((.....))))-).------...........((((((((.((((..--...)))).......))))))))..)))))......... ( -24.70)
>DroSim_CAF1 141848 89 + 1
UAAGGCAAAGUAUCCCACGGAUG-CA------CAGUCUCCACCGCCGACGGCAAGUUC--CCUGGUUCUCAAAUCCGUCGGCAAUUGUCACGUAAUAA
...(((((.((((((...)))))-).------...........((((((((..((..(--....)..)).....))))))))..)))))......... ( -28.30)
>DroEre_CAF1 140332 94 + 1
UAUGGCGAAGUAUCAGACGGAUG-CACAUGAAGAGACUCCACCGCCGACGGCAACUU---CCAGGUUUUCAAAUCCGUCGGCAGUUGUCACGUAAUAA
(((.(((..(((((.....))))-).........(((...((.((((((((.((((.---...)))).......)))))))).)).))).))).))). ( -26.80)
>DroYak_CAF1 176083 88 + 1
UGUGGCACAGUGUCGCAGUGAUG-CACCUGAACAGUCUUCACCGCCGACGGCAACUUA--CCAUGUUCUCAAAUCCGUCGGC-------ACGUGAUAA
...(((.(((.((.(((....))-))))))....))).((((.((((((((.......--..............))))))))-------..))))... ( -26.00)
>DroAna_CAF1 130627 87 + 1
GAUGGU----UUUUCCAGACACG-CA------CUAUCUUACCAGCCGACGGUUUCGUCAUCCUCAGUUACAAAUCCGUCGGUAGCUGCCAUGGAAGGA
.....(----(((((((.....(-((------((.........((((((((.((.((.((.....)).)).)).)))))))))).)))..)))))))) ( -21.50)
>consensus
UAUGGCAAAGUAUCCCACGGAUG_CA______CAGUCUCCACCGCCGACGGCAACUUC__CCUGGUUCUCAAAUCCGUCGGCAGUUGUCACGUAAUAA
...(((((...(((.....))).....................((((((((.......................))))))))..)))))......... (-14.64 = -15.58 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:10 2006