Locus 8316

Sequence ID 3R_DroMel_CAF1
Location 22,201,637 – 22,201,739
Length 102
Max. P 0.992670
window13407

overview

Window 7

Location 22,201,637 – 22,201,739
Length 102
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 74.20
Mean single sequence MFE -28.87
Consensus MFE -12.65
Energy contribution -13.43
Covariance contribution 0.78
Combinations/Pair 1.06
Mean z-score -2.77
Structure conservation index 0.44
SVM decision value 2.34
SVM RNA-class probability 0.992670
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22201637 102 + 27905053
ACU-----CGGUUGCCUGUUUAUUUGUUGCCAUUUUUAGUUGCUUUAAACUUGCAGCUUAAUAGCAAUUCUCCGCUUGGCCACC-ACUUGGACGGCAGGCAAGC--CUUU
...-----.(((((((((((.....(((((.(((...((((((.........)))))).))).)))))..((((..(((...))-)..)))).))))))).)))--)... ( -32.20)
>DroVir_CAF1 75777 89 + 1
GCU-----CGCCUGGCUGUUUAUUUGCUGUCAUU-UUAGUUGCUUUAAAUUUGCAGCUUAAUGGCAAUUCCACGCUUGGCCACA---------------CACAGCCCUCC
...-----.....((((((........(((((((-..((((((.........)))))).)))))))...(((....))).....---------------.)))))).... ( -23.90)
>DroPse_CAF1 72809 103 + 1
CUCCCAUG-CCCUGGCUGUUUAUUUGUUGCCAUUUUUAGUUGGCUUAAAGCUGCAGCUUAAUGGCAAUUCUCCGCUUGGCCACCCGCUCGGGCAG----CAGCC--CUUU
........-....(((((((.....(((((((((...(((((((.....))..))))).))))))))).....(((((((.....)).)))))))----)))))--.... ( -34.00)
>DroSec_CAF1 46045 100 + 1
--U-----CGGUUGCCUGUUUAUUUGUUGCCAUUUUUAGUUGCUUUAAACUUGCAGCUUAAUAGCAAUUCUCCGCUUGGCCACC-ACUUGGACGGCAGGCAAGC--CUUU
--.-----.(((((((((((.....(((((.(((...((((((.........)))))).))).)))))..((((..(((...))-)..)))).))))))).)))--)... ( -32.20)
>DroMoj_CAF1 69281 87 + 1
GCU-----AGCCUGACUGUUUAUUUGCUGUCAUU-UUAGUUGCUUUAAAUUUGCAGCUUAAUGGCAAUUCUACGCUUGACCACA---------------CACGC--CUCC
...-----.(((((((.((......)).))))..-..((((((.........))))))....)))........((.((......---------------)).))--.... ( -16.90)
>DroPer_CAF1 65720 103 + 1
CUCCCAUG-CCCUGGCUGUUUAUUUGUUGCCAUUUUUAGUUGGCUUAAAGCUGCAGCUUAAUGGCAAUUCUCCGCUUGGCCACCCGCUCGGGCAG----CAGCC--CUUU
........-....(((((((.....(((((((((...(((((((.....))..))))).))))))))).....(((((((.....)).)))))))----)))))--.... ( -34.00)
>consensus
CCU_____CGCCUGGCUGUUUAUUUGUUGCCAUUUUUAGUUGCUUUAAACUUGCAGCUUAAUGGCAAUUCUCCGCUUGGCCACC__CU_GG_C_G____CAAGC__CUUU
.................((......(((((((((...((((((.........)))))).))))))))).....))................................... (-12.65 = -13.43 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:39 2006