Locus 830

Sequence ID 3R_DroMel_CAF1
Location 2,855,001 – 2,855,092
Length 91
Max. P 0.729467
window1317

overview

Window 7

Location 2,855,001 – 2,855,092
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 88.34
Mean single sequence MFE -24.97
Consensus MFE -22.12
Energy contribution -23.07
Covariance contribution 0.95
Combinations/Pair 1.12
Mean z-score -1.55
Structure conservation index 0.89
SVM decision value 0.42
SVM RNA-class probability 0.729467
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2855001 91 - 27905053
GUGCAUUUCGUCUGCGUCGUUUGGCUCGUUUUGCCGGUAAAUUUUCCAACGCAAUUUCGCCAUUCUUCCGUUUGAGUGUGCGGUUGCACAC
(((((.......(((((.....(((.......)))((........)).)))))...(((((((((........))))).)))).))))).. ( -28.70)
>DroSec_CAF1 130066 91 - 1
GUGCAUUUGGUCUGCGUCCUUUGGCUCGUUUUGCCGGUAAAUUUUCCAACGCAAUUUCGCCAUUCUUCCGAGUGAGUGUGCGGUUGCACAC
(((((.......(((((.....(((.......)))((........)).)))))...(((((((((........))))).)))).))))).. ( -28.70)
>DroSim_CAF1 134896 91 - 1
GUGCAUUUUGUCUGCGUCCUUUGUCUCGUUUUGCCGGUAAAUUUUCCAACGCAAUUUCGCCAUUCUUCCGAGUGACUGUGCGGUUGCACAC
(((((......(((((..........((..((((.((........))...))))...)).(((((....)))))....))))).))))).. ( -19.40)
>DroEre_CAF1 132734 90 - 1
GUGCAUUUUGUCUGCGUCCUUUGGCUCGUU-UGCCGGUAAAUUUUCCAACGCAAUUUCGCCAUUCUUCCGACUGAGUGUGCGGUUGCACAC
(((((.......(((((.....(((.....-.)))((........)).)))))...(((((((((........))))).)))).))))).. ( -29.20)
>DroYak_CAF1 142975 90 - 1
GUGCAUUUUGUCUGCGUCCUUUGGCUCGUU-UGCCGGUAAAUUUUCCAACGCAAUUUCGCCAUUCUUCCGAGUGAGUGUGCGGUUGCACAC
(((((.......(((((.....(((.....-.)))((........)).)))))...(((((((((........))))).)))).))))).. ( -29.20)
>DroAna_CAF1 122107 78 - 1
GU-------------GUCCUUUGGCUCGUUUUGCCGGUAAAUUUUCCAACGCAAUUUUACCAUUCUUCCCAGCGAGUGUGUGGUCAGCUAC
((-------------((.....(((.......)))((........)).))))....(((((((((........))))).))))........ ( -14.60)
>consensus
GUGCAUUUUGUCUGCGUCCUUUGGCUCGUUUUGCCGGUAAAUUUUCCAACGCAAUUUCGCCAUUCUUCCGAGUGAGUGUGCGGUUGCACAC
(((((.......(((((.....(((.......)))((........)).)))))...(((((((((........))))).)))).))))).. (-22.12 = -23.07 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:08 2006