| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,152,942 – 22,153,062 |
| Length | 120 |
| Max. P | 0.532692 |
| Location | 22,152,942 – 22,153,062 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.66 |
| Mean single sequence MFE | -29.73 |
| Consensus MFE | -27.19 |
| Energy contribution | -26.97 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.91 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22152942 120 + 27905053 UUCAACAAGCUCGAACAUUUUGCGGUUACACCCAGGAAAUUGUUUGUUGGAUUUCUGAAUUAUAUUUUGCCAAGCCGAGCGGGCAGGAUGCAAAAUUUAAGCUGGCGAACAAAUAUUCCA ((((((((((.......(((((.((.....)))))))....)))))))))).....((((.....(((((((.(((.....))).....((.........))))))))).....)))).. ( -28.20) >DroSec_CAF1 83413 119 + 1 UUCAACAAGCUCGAACAUUUUGCGGUUACACCCAGGAAAUUGUUUGUUGGAUUUCUGAAUUAUAUUUUGCCA-GCCAAGCAGGCAGGAUGCAAAAUUUAAACCGGCGAACAAAUAUUCCA ....................((.((.....))))((((.(((((((((((.....((((((.(((((((((.-((...)).)))))))))...))))))..)))))))))))...)))). ( -29.20) >DroSim_CAF1 77894 119 + 1 UUCAACAACCUCGAACAUUUUGCGGUUACACCCAGGAAAUUGUUUGUUGGAUUUCUGAAUUAUAUUUUGCCA-GCCAAGCAGGCAGGAUGCAAAAUUUAAACCGGCGAACAAAUAUUCCA ......((((.(((.....))).)))).......((((.(((((((((((.....((((((.(((((((((.-((...)).)))))))))...))))))..)))))))))))...)))). ( -31.80) >consensus UUCAACAAGCUCGAACAUUUUGCGGUUACACCCAGGAAAUUGUUUGUUGGAUUUCUGAAUUAUAUUUUGCCA_GCCAAGCAGGCAGGAUGCAAAAUUUAAACCGGCGAACAAAUAUUCCA ....................((.((.....))))((((.(((((((((((.....((((((.(((((((((..........)))))))))...))))))..)))))))))))...)))). (-27.19 = -26.97 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:14 2006