Locus 8294

Sequence ID 3R_DroMel_CAF1
Location 22,150,510 – 22,150,630
Length 120
Max. P 0.717091
window13377

overview

Window 7

Location 22,150,510 – 22,150,630
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -20.20
Consensus MFE -19.42
Energy contribution -19.20
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.74
Structure conservation index 0.96
SVM decision value 0.39
SVM RNA-class probability 0.717091
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22150510 120 - 27905053
UUUUCACACAUUCCCAGUAGUUUUUGCCACACCCGCACCAUUGAACCCUCAAACACGUUGAAAUAUUUAUGUCUUUGCAUAUUUCACCGACACAUUUGCACUUGACAAUAACAACAGGGA
...........((((.((.(((.(((.((.....(((...((((....))))...((.((((((((.((......)).)))))))).)).......)))...)).))).))).)).)))) ( -20.70)
>DroSec_CAF1 80942 120 - 1
UUUUCACACAUUCCCAGUAGUUUUUGCCACACCCGCACCAUUGAACCCUCAAACACGUUGAAAUAUUUAUGUCUUUGCAUAUUUCACCGACACAUUUGCACUUGACAAUAACAACAGGGA
...........((((.((.(((.(((.((.....(((...((((....))))...((.((((((((.((......)).)))))))).)).......)))...)).))).))).)).)))) ( -20.70)
>DroSim_CAF1 75411 120 - 1
UUUUCACACAUUCCCAGUAGUUUUUGCCACACCCGCACCAUUGAACCCUCAAACACGUUGAAAUAUUUAUGUCUUUGCAUAUUUCACCGACACAUUUCCACUUGACAAUAGCAACAGGGA
...........((((.((.(((.(((.((...........((((....))))...((.((((((((.((......)).)))))))).)).............)).))).))).)).)))) ( -19.20)
>consensus
UUUUCACACAUUCCCAGUAGUUUUUGCCACACCCGCACCAUUGAACCCUCAAACACGUUGAAAUAUUUAUGUCUUUGCAUAUUUCACCGACACAUUUGCACUUGACAAUAACAACAGGGA
...........((((.((.(((.(((.((...........((((....))))...((.((((((((.((......)).)))))))).)).............)).))).))).)).)))) (-19.42 = -19.20 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:10 2006