Locus 829

Sequence ID 3R_DroMel_CAF1
Location 2,853,171 – 2,853,285
Length 114
Max. P 0.917402
window1316

overview

Window 6

Location 2,853,171 – 2,853,285
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 80.37
Mean single sequence MFE -22.51
Consensus MFE -14.82
Energy contribution -15.10
Covariance contribution 0.28
Combinations/Pair 1.42
Mean z-score -2.15
Structure conservation index 0.66
SVM decision value 1.11
SVM RNA-class probability 0.917402
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2853171 114 + 27905053
UUCAUCCCCCUACUCCAACCAUCCCUCCUCCAUCCAGCGGUGGCUCAUCUUCAGCUCACCGUUGCUCACUCGGCGUCUUUGCCGACUUGCGUUCGCACUUAAAAAUUAAUUUAA
..................................(((((((((((.......))).)))))))).....((((((....))))))..(((....)))................. ( -25.70)
>DroSec_CAF1 128274 114 + 1
UUCAUACCCCUCCUGCAACCUACCACCCUCCAUCCGUCGGUGGCUCAUCUUCAGCUCACCGCUGCUCACUCGGCGUCUUCGUCGACUUGCGUUCGCACUUAAAAAUUAAUUUAA
.............((((((................(.((((((((.......))).)))))).((....((((((....))))))...))))).)))................. ( -23.30)
>DroSim_CAF1 133099 114 + 1
UUCAUACCCCUCCUCCAACCAUCCACCCUCCAUCCGUCGGUGGCUCAUCUUCAGCUCACCGCUGCUCACUCGGCGUCUUCGUCGACUUGCGUUCGCACUUAAAAAUUAAUUUAA
......................(((((..(.....)..)))))........((((.....)))).....((((((....))))))..(((....)))................. ( -20.00)
>DroYak_CAF1 141208 109 + 1
UUCAGCGCCCUCCUCCAUGCAACCCCC-----UUCAUCGGUGGUUCAUCUUAAGCUCGCCGCUGUUCAGUCGCCGUCUUCGCCGACUUGCGUUCGCACUUAAAAAUUAAUUUAA
..((((((........(((.((((.((-----......)).))))))).........).)))))...(((((.((....)).)))))(((....)))................. ( -22.03)
>DroAna_CAF1 120371 100 + 1
UUCGC-GCCCUCCUCGGGCCACCCCUA----UUCCUUUGGUGGCUCAUCUUCUGCUCACCGUAGCUCACUCGACGUC---------UUGUGCUCGCACUUAAAAAUUAAUUUAA
...((-((...(.((((((((((....----.......)))))))).....((((.....)))).......)).)..---------..))))...................... ( -21.50)
>consensus
UUCAUACCCCUCCUCCAACCAACCCCCCUCCAUCCAUCGGUGGCUCAUCUUCAGCUCACCGCUGCUCACUCGGCGUCUUCGCCGACUUGCGUUCGCACUUAAAAAUUAAUUUAA
..................................((.((((((((.......))).))))).)).....((((((....))))))..(((....)))................. (-14.82 = -15.10 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:07 2006