Locus 828

Sequence ID 3R_DroMel_CAF1
Location 2,851,719 – 2,851,816
Length 97
Max. P 0.619776
window1315

overview

Window 5

Location 2,851,719 – 2,851,816
Length 97
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 79.97
Mean single sequence MFE -20.57
Consensus MFE -12.91
Energy contribution -12.94
Covariance contribution 0.03
Combinations/Pair 1.16
Mean z-score -1.56
Structure conservation index 0.63
SVM decision value 0.18
SVM RNA-class probability 0.619776
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2851719 97 + 27905053
UAAGCCUGCAAC------------UCCUCCUUUUCCAACCGCACCUCAUGCAGUGACGAUGGCCCAUCUGGGCAUUUAUAACUCGUUAAAUGCUCAAUAACUUUAUUCC
...(((((((..------------........................))))).).)((((...))))((((((((((........))))))))))............. ( -16.17)
>DroSec_CAF1 126818 97 + 1
UAAGCCUGCAAC------------UCCUCCUUUUCCAACCGCACCUCAUGCAGUGACGAUGGCCCAUCUGGGCAUUUAUAACUCGUUAAAUGCUCAAUAACUUUAUUCC
...(((((((..------------........................))))).).)((((...))))((((((((((........))))))))))............. ( -16.17)
>DroSim_CAF1 131621 93 + 1
----CCUGCAAC------------UCCUCUUUUUCCAACCGCACCUCAUGCAGUGUCGAUGGCCCAUCUGGGCAUUUAUAACUCGUUAAAUGCUCAAUAACUUUAUUCC
----........------------..........(((.(.((((........)))).).)))......((((((((((........))))))))))............. ( -17.20)
>DroEre_CAF1 129646 109 + 1
UAAGCCUGGGACUCCUCCCUCUCCCUUUCCCUUUCCCAGCGAACCUCAUGCAGUGACGAUGGCCCAUCUGGGCAUUUAUAACUCGUUAAAUGCUCAAUAACUUUAUUCC
...((.(((((......................))))))).........(((.((((((..((((....)))).........))))))..)))................ ( -21.35)
>DroYak_CAF1 139801 109 + 1
UAAGCCUGGGCCUGGGCCUGAGACUCCUCCCUUUCCACCCGAACCUCAUGCAGUGACGAUGGCCCAUCUGGGCAUUUAUAACUCGUUAAACGCUCAAUAACUUUAUUCC
......((((((((((...((((........))))..))))..(.((((...)))).)..))))))..(((((.((((........)))).)))))............. ( -24.40)
>DroAna_CAF1 119063 83 + 1
UGAGCCUGCAAC------------GCC--------------CGCCGCAUGCGGCGAAGAUGGACCAUCUGGGCGUUUAUAACUCGUUAAAUGCUCAAUAACUUUAUUCC
(((((....(((------------(((--------------(((((....))))..(((((...))))))))))))..(((....)))...)))))............. ( -28.10)
>consensus
UAAGCCUGCAAC____________UCCUCCUUUUCCAACCGCACCUCAUGCAGUGACGAUGGCCCAUCUGGGCAUUUAUAACUCGUUAAAUGCUCAAUAACUUUAUUCC
.....(((((......................................)))))....((((...))))((((((((((........))))))))))............. (-12.91 = -12.94 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:06 2006