Locus 8274

Sequence ID 3R_DroMel_CAF1
Location 22,140,296 – 22,140,416
Length 120
Max. P 0.923481
window13344

overview

Window 4

Location 22,140,296 – 22,140,416
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.75
Mean single sequence MFE -29.20
Consensus MFE -28.84
Energy contribution -28.72
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.39
Structure conservation index 0.99
SVM decision value 1.16
SVM RNA-class probability 0.923481
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22140296 120 - 27905053
UAUACUUGAAAUGCUGGCCUUGCCAUCAGCAUCACAAUUGUUUGUCUGAUGGUGCCGCGCUCAACAUGGCGUAUACGUGAUGCUAUGAUAAUCAUGCUUAUUUACAAUAAAUCUCAACUC
.....((((...((((((...((((((((((..((....)).)).)))))))))))).))....((((((((.......))))))))..........................))))... ( -29.90)
>DroSec_CAF1 70640 120 - 1
UAUACUUGAAAUGCUGGCCUUGCCAUCAGCAUCUCAAUUGUUUGUCUGAUGGUUCCGCGCUCAACAUGGCGUAUACGUGAUGCUAUGAUAAUCAUGCUUAUUUACAAUAAAUCUCGACUC
.....((((...(((((....((((((((((.(......)..)).)))))))).))).))....((((((((.......))))))))..........................))))... ( -26.00)
>DroSim_CAF1 63643 120 - 1
UAUACUUGAAAUGCUGGCCUUGCCAUCAGCAUCUCAAUUGUUUGUCUGAUGGUGCCGAGCUCAACAUGGCGUAUACGUGAUGCUAUGAUAAUCAUGCUUAUUUACAAUAAAUCUCGACUC
.....((((...((((((...((((((((((.(......)..)).))))))))))).)))....((((((((.......))))))))..........................))))... ( -29.70)
>DroEre_CAF1 65933 120 - 1
UAUACUUGAAAUGCUGGCCUUGCCAUCAGCAUCUCAAUUGUUUGUCUGAUGGUGCCGCGCCCAACAUGGCGUAUACGUGAUGCCAUGAUAAUCAUGCUUAUUUACAAUAAAUCUCGACUC
.....((((...((((((...((((((((((.(......)..)).)))))))))))).))....((((((((.......))))))))..........................))))... ( -30.90)
>DroYak_CAF1 63230 120 - 1
UAUACUUGAAAUGCUGGCCUUGCCAUCAGCAUCUCAAUUGUUUGUCUGAUGGUGCCGCGCGCAACAUGGCGUAUACGUGAUGCUAUGAUAAUCAUGCUUAUUUACAAUAAAUCUCGACUC
.....((((...((((((...((((((((((.(......)..)).)))))))))))).))....((((((((.......))))))))..........................))))... ( -29.50)
>consensus
UAUACUUGAAAUGCUGGCCUUGCCAUCAGCAUCUCAAUUGUUUGUCUGAUGGUGCCGCGCUCAACAUGGCGUAUACGUGAUGCUAUGAUAAUCAUGCUUAUUUACAAUAAAUCUCGACUC
.....((((...((((((...((((((((((.(......)..)).)))))))))))).))....((((((((.......))))))))..........................))))... (-28.84 = -28.72 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:31 2006