| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,844,284 – 2,844,381 |
| Length | 97 |
| Max. P | 0.636769 |
| Location | 2,844,284 – 2,844,381 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 87.13 |
| Mean single sequence MFE | -14.23 |
| Consensus MFE | -12.32 |
| Energy contribution | -12.35 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2844284 97 + 27905053 UCGUCUAAAUUUAUGCGGCUUUGCCAUAAAUUUAGCAGGCUAUAAGGAUAUCAUUAAAGCGCAACCACACACCCACACCCUCA---AGCAACCACUCACA ..(.((((((((((..(((...))))))))))))))..(((.(((........))).))).......................---.............. ( -13.00) >DroSim_CAF1 124299 97 + 1 UCGUCUAAAUUUAUGCGGCUUUGCCAUAAAUUUAGCAGGCUAUAAGGAUAUCAUUAAAGCGCAACCACACACCCACACCCUCA---AGCAACCACACACA ..(.((((((((((..(((...))))))))))))))..(((.(((........))).))).......................---.............. ( -13.00) >DroEre_CAF1 122645 95 + 1 UCGUCUAAAUUUAUGCGGCUUUCCCAUAAAUUUAGCAGGCUAUAAGGAUAUCAUUAAAGCGCAACCACACACCCACACCCUCA---AGCAACCACACA-- ..(.(((((((((((.((....))))))))))))))..(((.(((........))).))).......................---............-- ( -15.10) >DroYak_CAF1 131832 97 + 1 UCGUCUAAAUUUAUGCGGCUUUCCCAUAAAUUUACCAGGCUAUAAGGAUAUCAUUAAAGCGCAACCACACACCCACACCCUCA---AGCAACCACACACA .....((((((((((.((....))))))))))))....(((.(((........))).))).......................---.............. ( -11.50) >DroMoj_CAF1 187450 80 + 1 ACGUCUAAAUUUAUGCGGCUUUGCCAUAAAUUUGGCAGGCUGUAAGGAUAUCAUUAAAGCUCACCAACACACACACACAC-------------------- ........(((..((((((((.((((......))))))))))))..)))...............................-------------------- ( -17.80) >DroAna_CAF1 112765 100 + 1 UCGUCUAAAUUUAUGCGGCUUCGCCAUAAAUUUAGCAGGCUAUAAGGAUAUCAUUAAAGCGCAACCACACACCCACACACUUACUAAAUAAACACUCACA ..(.(((((((((((((....)).))))))))))))..(((.(((........))).)))........................................ ( -15.00) >consensus UCGUCUAAAUUUAUGCGGCUUUGCCAUAAAUUUAGCAGGCUAUAAGGAUAUCAUUAAAGCGCAACCACACACCCACACCCUCA___AGCAACCACACACA ..(.(((((((((((.(......)))))))))))))..(((.(((........))).)))........................................ (-12.32 = -12.35 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:02 2006