Locus 8234

Sequence ID 3R_DroMel_CAF1
Location 22,064,997 – 22,065,113
Length 116
Max. P 0.903746
window13271

overview

Window 1

Location 22,064,997 – 22,065,113
Length 116
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 86.59
Mean single sequence MFE -24.74
Consensus MFE -16.86
Energy contribution -17.22
Covariance contribution 0.36
Combinations/Pair 1.12
Mean z-score -2.70
Structure conservation index 0.68
SVM decision value 1.03
SVM RNA-class probability 0.903746
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22064997 116 - 27905053
AGCGCUUACAAAGCCGCCAUAGUGGCGCCCCAAAAAGGGAGCUGCAAAUA---AAAAAAUAAGAAAACAAAGUUUCAGCAACUUGUAUAAAUAAAAAUGUUUUGGUAUACGAGUGAUAA
.((((.......(((((....)))))(((((.....))).)).)).....---.........((((......)))).)).(((((((((...(((....)))...)))))))))..... ( -28.70)
>DroSec_CAF1 56978 111 - 1
GGCGCUUACAAAGUCGCCAUAGUGGCGCCCCAAAA--GGAGCUGCAAAUA---AAAAAAUAAG---ACAAAGUUUUAGCAACUUGUAUAAAUAAAAAUGUUUUGGUAUACGAGUGAUAA
((((((.....)).))))...(..((.((......--)).))..).....---......((((---((...))))))...(((((((((...(((....)))...)))))))))..... ( -25.40)
>DroSim_CAF1 49980 111 - 1
GGCGCUUACAAAGUCGCCAUAGUGGCGCCCCAAAA--GGAGCUGCAAAUA---AAAAAAUAAG---ACAAAGUUUUAGCAACUUGUAUAAAUAAAAAUGUUUUGGUAUACGAGUGAUAA
((((((.....)).))))...(..((.((......--)).))..).....---......((((---((...))))))...(((((((((...(((....)))...)))))))))..... ( -25.40)
>DroEre_CAF1 51565 112 - 1
AGCGC-UACAAUGCCGACAUAGUGGCGCCCAAAAA--GGAGCUACCAACC---AAAAAAUAAGAAAA-AAAGUUUCGGCAACUUGUAUAAAUAAAAAUGUUUUGGUACACAAGUGAUAA
.((((-(((.(((....))).)))))))((.....--)).(((....(((---((((.....((((.-....))))(....).................))))))).....)))..... ( -22.30)
>DroYak_CAF1 59396 110 - 1
-------ACAAUGUAGUCACUAUGGCGCCCAAAAA--GGAGCUGCCAAUAAAGAAAAAAUAAGAAAACAAAGUUUGAGCAACUUGUAUAAAUAAAAAUGUUUUGGUAUACGAGUGAUAA
-------........((((((.((((((((.....--)).)).))))...........(((..((((((..(((((.((.....)).))))).....))))))..)))...)))))).. ( -21.90)
>consensus
AGCGCUUACAAAGUCGCCAUAGUGGCGCCCCAAAA__GGAGCUGCAAAUA___AAAAAAUAAGAAAACAAAGUUUCAGCAACUUGUAUAAAUAAAAAUGUUUUGGUAUACGAGUGAUAA
.((....((...(((((....)))))((((.......)).)).............................))....)).(((((((((...(((....)))...)))))))))..... (-16.86 = -17.22 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:18 2006