Locus 823

Sequence ID 3R_DroMel_CAF1
Location 2,835,328 – 2,835,423
Length 95
Max. P 0.964870
window1309

overview

Window 9

Location 2,835,328 – 2,835,423
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 96.84
Mean single sequence MFE -29.06
Consensus MFE -27.36
Energy contribution -27.44
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.55
Structure conservation index 0.94
SVM decision value 1.57
SVM RNA-class probability 0.964870
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2835328 95 + 27905053
UGCGUUUUGUGUCUCCGCUGCAGUUAAAACGGAACCCGUCGUCGUCGAUGGUGACUCUACUCCGGCGACGACGAAAACGACAACGACUUAAUUAA
...(((...((((((((.(........).))))...(((((((((((..((((....)))).))))))))))).....))))..)))........ ( -30.60)
>DroSec_CAF1 110499 95 + 1
UGCGCUUUGUGUCUCCGCUACAGUUAAAACGGAACCCGUCGUCGUCGAUGGUGACUCCACUUUGGCGACGACGAAAACGACAACGACUUAAUUAA
......(((((((((((............))))...((((((((((((.((((....)))))))))))))))).....))).))))......... ( -31.40)
>DroSim_CAF1 115187 95 + 1
UGCGCUUUGUGUCUCCGCUGCAGUUAAAACGGAACCCGUCGUAGUCGAUGGUGACUCUACUCCGGCGACGACGAAAACGACAACGACUUAAUUAA
......(((((((((((.(........).))))...((((((.((((..((((....)))).)))).)))))).....))).))))......... ( -23.60)
>DroEre_CAF1 113860 95 + 1
UGCGUUUUGUGUCUCCGCUGCAGUUAAAACGGAACCCGUCGUCGUCGAUGGCGACUCUACUCCGGCGACGACGAAAACGACAACGACUUAAUUAA
...(((...((((((((.(........).))))...(((((((((((..(.........)..))))))))))).....))))..)))........ ( -29.10)
>DroYak_CAF1 114053 95 + 1
UGCGUUUUGUGUCUCCGCUGCAGUUAAAACGGAACCCGUCGUCGUCGAUGGUGACUCUACUCCGGCGACGACGAAAACGACAACGACUUAAUUAA
...(((...((((((((.(........).))))...(((((((((((..((((....)))).))))))))))).....))))..)))........ ( -30.60)
>consensus
UGCGUUUUGUGUCUCCGCUGCAGUUAAAACGGAACCCGUCGUCGUCGAUGGUGACUCUACUCCGGCGACGACGAAAACGACAACGACUUAAUUAA
......(((((((((((.(........).))))...(((((((((((..((((....)))).))))))))))).....))).))))......... (-27.36 = -27.44 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:00 2006