| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,055,043 – 22,055,142 |
| Length | 99 |
| Max. P | 0.912101 |
| Location | 22,055,043 – 22,055,142 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 71.54 |
| Mean single sequence MFE | -26.24 |
| Consensus MFE | -11.68 |
| Energy contribution | -12.48 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.44 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.912101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22055043 99 + 27905053 UCUGGACAGUUCCCCAGU---GGAAAAA--AAAAACUGGAUUUAUUUCUUAUCGCAAAACUUGCGAUAACCAAUUUGUAUAUGUUCAUUCAGGGAGCGUGCCGA ..(((...((((((.(((---(((....--..(((.(((.........((((((((.....))))))))))).))).......))))))..))))))...))). ( -27.32) >DroSec_CAF1 47132 99 + 1 UCUGGACAGUUCCCAGGG---AGGAAAA--AAAAACUGGAUUUAUUUCUUAUCGCAAAACUUGCGAUAACCAAUUUGUAUAUGUUCGUUCCUGGAGCGUGCCGA ..(((...(((((.((((---(.(((..--..(((.(((.........((((((((.....))))))))))).))).......))).))))))))))...))). ( -30.10) >DroSim_CAF1 39791 101 + 1 UCUGGACAGUUCCCAGGG---AGGAAAAAAAAAAACUGGAUUUAUUUCUUAUCGCAAAACUUGCGAUAACCAAUUUGUAUAUUUUCAUUCCGGGAGCGUGCCGA ..(((...((((((.(((---(.(((((....(((.(((.........((((((((.....))))))))))).))).....))))).))))))))))...))). ( -31.40) >DroEre_CAF1 41555 83 + 1 UCUGGACAGUUCCCUGG---------------------GACUUUUGUCUUAUCGCAAAACUUCCGAUAGCCAAUUUGUAGAGGUUCAUUUCGGGAGCGUGCCGA ..(((...((((((.((---------------------((.((((((......)))))).))))((.((((..........))))....))))))))...))). ( -24.20) >DroYak_CAF1 49289 95 + 1 UCUGGACAGUUCCCUGGG---G----AA--ACAAAAUGGACUUAAGUCUUAUCGCCAAGCUACCGAUAACCAAUUUGUAUACGUUCAUUCCGGGAGCGUGCCGA ..(((...((((((.(((---.----..--.)..(((((((.(((((.((((((.........))))))...))))).....)))))))))))))))...))). ( -24.80) >DroPer_CAF1 133496 84 + 1 UCUGGCUUUUUCCCUGCCCUUGUGAAA-----------UAUUUCUUCCUUAUC---AUCCGUUCGAUAAGA-----GAAUGUAGUCAUAGCGGACGCGUGCC-A ...(((.......((((...(((((..-----------...((((..((((((---........)))))))-----))).....)))))))))......)))-. ( -19.62) >consensus UCUGGACAGUUCCCUGGG___GGGAAAA__AAAAACUGGAUUUAUUUCUUAUCGCAAAACUUGCGAUAACCAAUUUGUAUAUGUUCAUUCCGGGAGCGUGCCGA ...((...((((((.((.....................((......))((((((.........))))))....................))))))))...)).. (-11.68 = -12.48 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:41 2006