| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,830,461 – 2,830,557 |
| Length | 96 |
| Max. P | 0.573032 |
| Location | 2,830,461 – 2,830,557 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 76.30 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -12.15 |
| Energy contribution | -12.04 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.573032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2830461 96 + 27905053 GUGGUGAAAUACGAUGUGGCAACACCCAGCGGCGCCACGAACAAGCACACACUCACAGAUACACACGCACUCUCC-GGAGCACCCACACUUUACCCC- ((((((.....((..(((....)))....)).)))))).............(((..(((...........)))..-.))).................- ( -17.20) >DroVir_CAF1 164214 87 + 1 UUGGUGAAAUACGAUGUGGCAACACCCUACAGCGCCACUAGCAUGCACACCCACACAC-----CA--CACACUCGCAGA-GACUCUCCCUCUG-CC-- .(((((.........(((....)))......((.......)).............)))-----))--.......(((((-(.......)))))-).-- ( -21.70) >DroSec_CAF1 105605 95 + 1 GUGGUGAAAUACGAUGUGGCAACACCCAGCGGCGCCACUAACAUGCACACACUCACAGAUACGCAUGCACACUCC-GGAGCACCCACACUUUU-CCC- ((((((.....((..(((....)))....)).))))))...(((((................)))))........-((.....))........-...- ( -20.29) >DroYak_CAF1 109001 91 + 1 GUGGUGAAAUACGAUGUGGCAACACCCAGCGGCGCCACUAACAUGCACACACUCACAGAUACGCACGCACUCUCC-GUAGCACCC----UCUU-CCC- ..((((...((((..(((....)))...((((((...........................))).)))......)-))).)))).----....-...- ( -20.83) >DroMoj_CAF1 171069 92 + 1 GUGGUGAAAUACGAUGUGGCAACACCCUACAGUGCUACUAACAUGCACACCCACACCCACACACA--UACACUCGCGGA-GACUCUCCCUCUG-CC-- ((((((.........(((....)))......((((.........)))).....)).)))).....--.......(((((-(.......)))))-).-- ( -24.50) >DroAna_CAF1 96903 86 + 1 GUGGUGAAAUACGAUGUGGCAACACCCAGCGGCGCCACUAACAUGCACCCACACAACCAAAC-----------CC-GGCUCACCCACACUUUCUCCCU (((((((....((..(((....)))...(.((.((.........)).)))............-----------.)-)..))).))))........... ( -16.10) >consensus GUGGUGAAAUACGAUGUGGCAACACCCAGCGGCGCCACUAACAUGCACACACACACACAUAC_CA__CACACUCC_GGAGCACCCACACUCUG_CCC_ ((((((.........(((....))).......))))))............................................................ (-12.15 = -12.04 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:59 2006